Transcript: Human XM_017026090.1

PREDICTED: Homo sapiens beta-1,4-galactosyltransferase 6 (B4GALT6), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
B4GALT6 (9331)
Length:
6428
CDS:
2236..3060

Additional Resources:

NCBI RefSeq record:
XM_017026090.1
NBCI Gene record:
B4GALT6 (9331)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017026090.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000415820 ATGTAATCGGTTATACCTTTA pLKO_005 3460 3UTR 100% 10.800 15.120 N B4GALT6 n/a
2 TRCN0000035322 CCAGAGTTAGCTCCAATCGAA pLKO.1 3031 CDS 100% 3.000 4.200 N B4GALT6 n/a
3 TRCN0000436046 ATCGATGGACTGAACAATTTA pLKO_005 2950 CDS 100% 15.000 10.500 N B4GALT6 n/a
4 TRCN0000416274 GACCACAATGCTGGATCATAA pLKO_005 3086 3UTR 100% 13.200 9.240 N B4GALT6 n/a
5 TRCN0000035323 GAGTTCACTATGCTGGATATA pLKO.1 2810 CDS 100% 13.200 9.240 N B4GALT6 n/a
6 TRCN0000425065 TACTGGTTGATAGGTTGTATA pLKO_005 2987 CDS 100% 13.200 9.240 N B4GALT6 n/a
7 TRCN0000035321 CGCCATGAACATCTTCCAATT pLKO.1 2410 CDS 100% 10.800 7.560 N B4GALT6 n/a
8 TRCN0000077101 CGATGGACTGAACAATTTATT pLKO.1 2952 CDS 100% 15.000 10.500 N B4galt6 n/a
9 TRCN0000334278 CGATGGACTGAACAATTTATT pLKO_005 2952 CDS 100% 15.000 10.500 N B4galt6 n/a
10 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 18 5UTR 100% 5.625 2.813 Y KLHL30 n/a
11 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 18 5UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017026090.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11358 pDONR223 100% 70.5% 57.6% None (many diffs) n/a
2 ccsbBroad304_11358 pLX_304 0% 70.5% 57.6% V5 (many diffs) n/a
3 TRCN0000472131 GCACTTCGATGTTCCGATGCACAA pLX_317 44.1% 70.5% 57.6% V5 (many diffs) n/a
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