Transcript: Human XM_017029238.2

PREDICTED: Homo sapiens UTP14A small subunit processome component (UTP14A), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
UTP14A (10813)
Length:
2730
CDS:
1237..2586

Additional Resources:

NCBI RefSeq record:
XM_017029238.2
NBCI Gene record:
UTP14A (10813)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017029238.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000330887 GTCTGAATTGAGAGTACTATC pLKO_005 1641 CDS 100% 10.800 15.120 N UTP14A n/a
2 TRCN0000330886 CAAAGAAGACAGTGGAGTTAC pLKO_005 415 5UTR 100% 10.800 7.560 N UTP14A n/a
3 TRCN0000353705 GAACCTCCTAACCACACAATC pLKO_005 1956 CDS 100% 10.800 7.560 N UTP14A n/a
4 TRCN0000330960 TGAATGCAGATGGGCCGAATC pLKO_005 1370 CDS 100% 6.000 4.200 N UTP14A n/a
5 TRCN0000143787 GCAGGAACAGTTGTCTAAGAA pLKO.1 1239 CDS 100% 5.625 3.938 N UTP14A n/a
6 TRCN0000330888 ATCCAGCTGCAGCACTAGAAG pLKO_005 904 5UTR 100% 4.950 3.465 N UTP14A n/a
7 TRCN0000142763 CAGCTGAAGAAATGCTCTGTA pLKO.1 2560 CDS 100% 4.950 3.465 N UTP14A n/a
8 TRCN0000143521 GAAGTGCAGATGAATGCAGAT pLKO.1 1360 CDS 100% 4.050 2.835 N UTP14A n/a
9 TRCN0000143036 CCATGGAGTTTCTGAAAGTGA pLKO.1 1473 CDS 100% 3.000 2.100 N UTP14A n/a
10 TRCN0000179488 GATGGAAAGAATAGGCGGAAA pLKO.1 240 5UTR 100% 4.050 2.025 Y ALG11 n/a
11 TRCN0000138963 CGTGAAGAAAGGAAAGGCCAA pLKO.1 845 5UTR 100% 2.160 1.080 Y UTP14A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017029238.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02534 pDONR223 100% 58.2% 58.2% None 0_1ins966 n/a
2 ccsbBroad304_02534 pLX_304 0% 58.2% 58.2% V5 0_1ins966 n/a
3 TRCN0000465578 TGCATGACACCAAGGCCATCATCG pLX_317 15.3% 58.2% 58.2% V5 0_1ins966 n/a
4 ccsbBroadEn_07476 pDONR223 100% 54.7% 52.6% None (many diffs) n/a
5 ccsbBroad304_07476 pLX_304 0% 54.7% 52.6% V5 (many diffs) n/a
6 TRCN0000470431 CGCCTCAAGTTATAAGACGTAATG pLX_317 14.6% 54.7% 52.6% V5 (many diffs) n/a
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