Transcript: Mouse XM_017319202.1

PREDICTED: Mus musculus tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 (Tanc1), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Tanc1 (66860)
Length:
12672
CDS:
5454..11078

Additional Resources:

NCBI RefSeq record:
XM_017319202.1
NBCI Gene record:
Tanc1 (66860)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017319202.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000279577 ATACGCTGTCTTCGTTTATTA pLKO_005 7315 CDS 100% 15.000 21.000 N Tanc1 n/a
2 TRCN0000297173 GCTTATATCTGGCGATTTAAA pLKO_005 11304 3UTR 100% 15.000 21.000 N Tanc1 n/a
3 TRCN0000178012 GCTGAGTTTCATAAGCCTGAT pLKO.1 7287 CDS 100% 4.050 5.670 N Tanc1 n/a
4 TRCN0000279575 GCTGAGTTTCATAAGCCTGAT pLKO_005 7287 CDS 100% 4.050 5.670 N Tanc1 n/a
5 TRCN0000176582 CCAGTTACTATGGCTTATTTA pLKO.1 12549 3UTR 100% 15.000 12.000 N Tanc1 n/a
6 TRCN0000418954 AGCAAGGACAGTGGAATTATA pLKO_005 6159 CDS 100% 15.000 10.500 N TANC1 n/a
7 TRCN0000279529 ATGACGGATGAGCAGATATTT pLKO_005 7800 CDS 100% 15.000 10.500 N Tanc1 n/a
8 TRCN0000178631 CCACTTCCAAGCCTGATATTT pLKO.1 9331 CDS 100% 15.000 10.500 N Tanc1 n/a
9 TRCN0000297172 CCACTTCCAAGCCTGATATTT pLKO_005 9331 CDS 100% 15.000 10.500 N Tanc1 n/a
10 TRCN0000176581 CCGTTCTCTTAGGAGATTATT pLKO.1 11351 3UTR 100% 15.000 10.500 N Tanc1 n/a
11 TRCN0000217627 GATACGCTGTCTTCGTTTATT pLKO.1 7314 CDS 100% 15.000 10.500 N Tanc1 n/a
12 TRCN0000200429 GCCACTTCCAAGCCTGATATT pLKO.1 9330 CDS 100% 13.200 9.240 N Tanc1 n/a
13 TRCN0000182879 CCTGCAGTCTAACTCTGAGAA pLKO.1 10781 CDS 100% 4.950 3.465 N Tanc1 n/a
14 TRCN0000197957 GCTGGATATAAATGTGACTTT pLKO.1 11559 3UTR 100% 4.950 3.465 N Tanc1 n/a
15 TRCN0000434409 TACAGGACAGAAGTGTTAAAT pLKO_005 8280 CDS 100% 15.000 9.000 N TANC1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017319202.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.