Transcript: Mouse XM_017321075.2

PREDICTED: Mus musculus phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase (Paics), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Mus musculus (mouse)
Gene:
Paics (67054)
Length:
2106
CDS:
139..1413

Additional Resources:

NCBI RefSeq record:
XM_017321075.2
NBCI Gene record:
Paics (67054)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017321075.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000076100 CCAGTGGTATTGGCTGTTCAA pLKO.1 1241 CDS 100% 4.950 3.960 N Paics n/a
2 TRCN0000334640 CCAGTGGTATTGGCTGTTCAA pLKO_005 1241 CDS 100% 4.950 3.960 N Paics n/a
3 TRCN0000076101 CTGCTCAGATATTTGGGTTAA pLKO.1 1295 CDS 100% 10.800 7.560 N Paics n/a
4 TRCN0000363773 CTGCTCAGATATTTGGGTTAA pLKO_005 1295 CDS 100% 10.800 7.560 N Paics n/a
5 TRCN0000076098 GCACCTGCTTTCAAATACTAT pLKO.1 1944 3UTR 100% 5.625 3.938 N Paics n/a
6 TRCN0000334642 GCACCTGCTTTCAAATACTAT pLKO_005 1944 3UTR 100% 5.625 3.938 N Paics n/a
7 TRCN0000076099 GCTGATAAGAAGGTCAGACAA pLKO.1 1381 CDS 100% 4.950 3.465 N Paics n/a
8 TRCN0000334641 GCTGATAAGAAGGTCAGACAA pLKO_005 1381 CDS 100% 4.950 3.465 N Paics n/a
9 TRCN0000045775 GCTGCTCAGATATTTGGGTTA pLKO.1 1294 CDS 100% 4.050 2.835 N PAICS n/a
10 TRCN0000286311 GCTGCTCAGATATTTGGGTTA pLKO_005 1294 CDS 100% 4.050 2.835 N PAICS n/a
11 TRCN0000076102 GCTGATGTCATTGATAATGAT pLKO.1 751 CDS 100% 5.625 3.375 N Paics n/a
12 TRCN0000045776 CGCATAAAGGACCAGATGAAA pLKO.1 1040 CDS 100% 5.625 3.938 N PAICS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017321075.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02484 pDONR223 100% 87.7% 95% None (many diffs) n/a
2 ccsbBroad304_02484 pLX_304 0% 87.7% 95% V5 (many diffs) n/a
3 TRCN0000492047 GCATTTTAACATCCAACACCCTAC pLX_317 29.6% 87.7% 95% V5 (many diffs) n/a
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