Transcript: Human XM_024446593.1

PREDICTED: Homo sapiens BCL2 associated athanogene 2 (BAG2), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
BAG2 (9532)
Length:
2742
CDS:
1231..1767

Additional Resources:

NCBI RefSeq record:
XM_024446593.1
NBCI Gene record:
BAG2 (9532)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024446593.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000331267 GTACTAGGATCTAGCATATTT pLKO_005 1991 3UTR 100% 15.000 21.000 N BAG2 n/a
2 TRCN0000033590 CCGTTGAAGTGTCAGTAGAAA pLKO.1 1409 CDS 100% 5.625 7.875 N BAG2 n/a
3 TRCN0000299788 CCGTTGAAGTGTCAGTAGAAA pLKO_005 1409 CDS 100% 5.625 7.875 N BAG2 n/a
4 TRCN0000033589 CCATCAAGCTATTAGAGCATT pLKO.1 1691 CDS 100% 4.950 6.930 N BAG2 n/a
5 TRCN0000299786 CCATCAAGCTATTAGAGCATT pLKO_005 1691 CDS 100% 4.950 6.930 N BAG2 n/a
6 TRCN0000303826 AGCATGCCACAAGGATTATTG pLKO_005 1463 CDS 100% 13.200 9.240 N BAG2 n/a
7 TRCN0000033591 GATCAGAAGTTTCAATCCATA pLKO.1 1585 CDS 100% 4.950 3.465 N BAG2 n/a
8 TRCN0000299787 GATCAGAAGTTTCAATCCATA pLKO_005 1585 CDS 100% 4.950 3.465 N BAG2 n/a
9 TRCN0000033592 GAGAAAGAAATCCTTCTGGAA pLKO.1 1285 CDS 100% 2.640 1.848 N BAG2 n/a
10 TRCN0000033593 GTGGTCAATAAGTTTCTGGAT pLKO.1 1489 CDS 100% 2.640 1.848 N BAG2 n/a
11 TRCN0000115175 GCCAGGACATGAGGCAGATTA pLKO.1 1328 CDS 100% 13.200 7.920 N Bag2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024446593.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02186 pDONR223 100% 82.6% 81.9% None (many diffs) n/a
2 ccsbBroad304_02186 pLX_304 0% 82.6% 81.9% V5 (many diffs) n/a
3 TRCN0000474133 GTGCCCCCTTAACCACTTTGTTTT pLX_317 72.8% 82.6% 81.9% V5 (many diffs) n/a
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