Transcript: Human XM_024447239.1

PREDICTED: Homo sapiens serine/threonine kinase 3 (STK3), transcript variant X13, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
STK3 (6788)
Length:
2798
CDS:
730..1740

Additional Resources:

NCBI RefSeq record:
XM_024447239.1
NBCI Gene record:
STK3 (6788)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024447239.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000380687 AGAACTACAGATGCGGTTAAA pLKO_005 1602 CDS 100% 13.200 18.480 N STK3 n/a
2 TRCN0000315194 GTCCGATGATTTCACCGATTT pLKO_005 1005 CDS 100% 10.800 15.120 N STK3 n/a
3 TRCN0000195220 CAAACTGTAATAAGCTCATCA pLKO.1 2596 3UTR 100% 4.950 6.930 N STK3 n/a
4 TRCN0000002177 CGGATGAAGATGAGCTGGATT pLKO.1 1211 CDS 100% 4.950 6.930 N STK3 n/a
5 TRCN0000315193 CGGATGAAGATGAGCTGGATT pLKO_005 1211 CDS 100% 4.950 6.930 N STK3 n/a
6 TRCN0000315195 TCTAGTATACTAGGCTATTTA pLKO_005 2100 3UTR 100% 15.000 10.500 N STK3 n/a
7 TRCN0000381880 CCATGATGGAACGGGAGATAG pLKO_005 1634 CDS 100% 10.800 7.560 N STK3 n/a
8 TRCN0000002175 GAATGCCAAACCTGTATCAAT pLKO.1 1101 CDS 100% 5.625 3.938 N STK3 n/a
9 TRCN0000002176 CCACAAATCCACCACCAACAT pLKO.1 965 CDS 100% 4.950 3.465 N STK3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024447239.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07012 pDONR223 100% 63.5% 57.1% None (many diffs) n/a
2 ccsbBroad304_07012 pLX_304 20.5% 63.5% 57.1% V5 (many diffs) n/a
3 TRCN0000475289 ACCGACTTGTTGACGCTCCGTCAA pLX_317 20.2% 63.5% 57.1% V5 (many diffs) n/a
4 ccsbBroadEn_14850 pDONR223 0% 63.5% 57.1% None (many diffs) n/a
5 ccsbBroad304_14850 pLX_304 20.5% 63.5% 57.1% V5 (many diffs) n/a
6 TRCN0000470542 TGTCTGCAAGTCTCTCTATTTCCC pLX_317 26.5% 63.5% 57.1% V5 (many diffs) n/a
7 TRCN0000491248 TCAACTCTAATCTCTCTTATATGC pLX_317 13.9% 63.5% 57.1% V5 (not translated due to prior stop codon) (many diffs) n/a
8 TRCN0000488127 AACTCAATGCCCTACCTTGTAGCA pLX_317 20.6% 63.4% 57% V5 (many diffs) n/a
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