Transcript: Human XM_024447910.1

PREDICTED: Homo sapiens 5'-nucleotidase, cytosolic II (NT5C2), transcript variant X19, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
NT5C2 (22978)
Length:
3496
CDS:
870..1841

Additional Resources:

NCBI RefSeq record:
XM_024447910.1
NBCI Gene record:
NT5C2 (22978)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024447910.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000050950 CGGTCAATTAGTGAGATTAAA pLKO.1 1731 CDS 100% 15.000 21.000 N NT5C2 n/a
2 TRCN0000289474 CGGTCAATTAGTGAGATTAAA pLKO_005 1731 CDS 100% 15.000 21.000 N NT5C2 n/a
3 TRCN0000050949 CCTGCTAACATGGATAAGCAT pLKO.1 234 5UTR 100% 3.000 4.200 N NT5C2 n/a
4 TRCN0000050948 CGGAGTATGTTCCAGGATGTA pLKO.1 697 5UTR 100% 4.950 3.960 N NT5C2 n/a
5 TRCN0000296251 GCTACCAACAGTGACTATAAA pLKO_005 897 CDS 100% 15.000 10.500 N NT5C2 n/a
6 TRCN0000296291 GTGATCTGTAATGTTACAAAT pLKO_005 2209 3UTR 100% 13.200 9.240 N NT5C2 n/a
7 TRCN0000050952 CCAGATATACCAGTTGTGAAA pLKO.1 641 5UTR 100% 4.950 3.465 N NT5C2 n/a
8 TRCN0000289475 CCAGATATACCAGTTGTGAAA pLKO_005 641 5UTR 100% 4.950 3.465 N NT5C2 n/a
9 TRCN0000050951 CCAGAAACTAGAGAACAGTAT pLKO.1 505 5UTR 100% 4.950 2.970 N NT5C2 n/a
10 TRCN0000289411 CCAGAAACTAGAGAACAGTAT pLKO_005 505 5UTR 100% 4.950 2.970 N NT5C2 n/a
11 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 2846 3UTR 100% 4.950 2.475 Y ERAP2 n/a
12 TRCN0000116227 CCTCCCAAAGTTCTGGGATTA pLKO.1 139 5UTR 100% 1.080 0.540 Y ELOVL7 n/a
13 TRCN0000164591 CCTCCCAAAGTTCTGGGATTA pLKO.1 139 5UTR 100% 1.080 0.540 Y TNNI1 n/a
14 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 2847 3UTR 100% 13.200 6.600 Y LIAS n/a
15 TRCN0000256748 GGCAGGAGAATTGCTTGAATC pLKO_005 3014 3UTR 100% 10.800 5.400 Y SMIM11A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024447910.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.