Transcript: Human XR_001740002.1

PREDICTED: Homo sapiens chloride voltage-gated channel 2 (CLCN2), transcript variant X4, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CLCN2 (1181)
Length:
2689
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001740002.1
NBCI Gene record:
CLCN2 (1181)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001740002.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000427876 CATTGGAATCGTTACTCTAAA pLKO_005 2553 3UTR 100% 13.200 18.480 N CLCN2 n/a
2 TRCN0000418292 CCTTTGCTGTCATTGGTATTG pLKO_005 1092 3UTR 100% 10.800 7.560 N CLCN2 n/a
3 TRCN0000419494 GGGTATCTATGAGAATGAATC pLKO_005 805 3UTR 100% 10.800 7.560 N CLCN2 n/a
4 TRCN0000044905 CCTGGTCATCTTCATTCTCAT pLKO.1 1426 3UTR 100% 4.950 3.465 N CLCN2 n/a
5 TRCN0000044904 CATCACTTTCTCAGCCGGATT pLKO.1 556 3UTR 100% 4.050 2.835 N CLCN2 n/a
6 TRCN0000044907 CCCTGAGATGAAGACCATCTT pLKO.1 616 3UTR 100% 0.495 0.347 N CLCN2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001740002.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10736 pDONR223 100% 39% None 1_1608del;1790C>T;2689_2690ins80 n/a
2 ccsbBroad304_10736 pLX_304 0% 39% V5 1_1608del;1790C>T;2689_2690ins80 n/a
3 TRCN0000470498 GCCGCGCAAACCTAATCCCCCCTC pLX_317 35.6% 39% V5 1_1608del;1790C>T;2689_2690ins80 n/a
4 TRCN0000489431 ATATAACCCGGTACCCCGACTGAA pLX_317 35.6% 39% V5 (not translated due to prior stop codon) 1_1608del;1790C>T;2689_2690ins80 n/a
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