Transcript: Human XR_001745553.2

PREDICTED: Homo sapiens protein phosphatase 3 catalytic subunit gamma (PPP3CC), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PPP3CC (5533)
Length:
2735
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001745553.2
NBCI Gene record:
PPP3CC (5533)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001745553.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000271275 GCGAGGTCTGGACCGAATTAA pLKO_005 1933 3UTR 100% 15.000 21.000 N PPP3CC n/a
2 TRCN0000381133 GTCCGAGGGTGCTCTTATTTC pLKO_005 1102 3UTR 100% 13.200 18.480 N PPP3CC n/a
3 TRCN0000320437 ACGCTGGTGGGCCAATGAAAT pLKO_005 1986 3UTR 100% 13.200 10.560 N PPP3CC n/a
4 TRCN0000006878 GCAGGCATCTTACAGACTATT pLKO.1 803 3UTR 100% 13.200 10.560 N PPP3CC n/a
5 TRCN0000377243 GTTGGAGGATCACCTAGTAAC pLKO_005 655 3UTR 100% 10.800 8.640 N PPP3CC n/a
6 TRCN0000006877 CGGCTTACTTTCAAGGAAGTA pLKO.1 430 3UTR 100% 0.495 0.396 N PPP3CC n/a
7 TRCN0000271274 CGTGGCTCAGGTGGATCTAAA pLKO_005 2085 3UTR 100% 13.200 9.240 N PPP3CC n/a
8 TRCN0000271276 GGACAATTCTTTGACCTAATG pLKO_005 622 3UTR 100% 10.800 7.560 N PPP3CC n/a
9 TRCN0000006875 CAGTCTGCATTTATTCTGTAA pLKO.1 2190 3UTR 100% 4.950 3.465 N PPP3CC n/a
10 TRCN0000006879 CCCAATTACCTAGATGTCTAT pLKO.1 1270 3UTR 100% 4.950 3.465 N PPP3CC n/a
11 TRCN0000006876 GCCCTCTTAAACCAGCAGTTT pLKO.1 910 3UTR 100% 4.950 3.465 N PPP3CC n/a
12 TRCN0000271212 TGGTAAATGTGCTCAACATAT pLKO_005 1439 3UTR 100% 13.200 7.920 N PPP3CC n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001745553.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06761 pDONR223 100% 55.9% None (many diffs) n/a
2 ccsbBroad304_06761 pLX_304 0% 55.9% V5 (many diffs) n/a
3 TRCN0000475207 ACGACCATGATACGACGGACCGAT pLX_317 21.2% 55.9% V5 (many diffs) n/a
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