Transcript: Human XR_001745598.2

PREDICTED: Homo sapiens NIPA like domain containing 2 (NIPAL2), transcript variant X4, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
NIPAL2 (79815)
Length:
7402
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001745598.2
NBCI Gene record:
NIPAL2 (79815)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001745598.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000121555 CGAAACTCTACAATACGACAA pLKO.1 1151 3UTR 100% 4.050 5.670 N NIPAL2 n/a
2 TRCN0000417720 AGCTCTGACAGTCTAATATTT pLKO_005 4414 3UTR 100% 15.000 10.500 N NIPAL2 n/a
3 TRCN0000432714 ATCATTGCAGGTATCATATTT pLKO_005 1213 3UTR 100% 15.000 10.500 N NIPAL2 n/a
4 TRCN0000412407 AGCCTCATTGACTGTTATTTC pLKO_005 996 3UTR 100% 13.200 9.240 N NIPAL2 n/a
5 TRCN0000121588 CAGCAAGAACAGTACAGTATT pLKO.1 600 3UTR 100% 13.200 9.240 N NIPAL2 n/a
6 TRCN0000418695 GAAACTTGGTGATCAGTATTT pLKO_005 264 3UTR 100% 13.200 9.240 N NIPAL2 n/a
7 TRCN0000121865 GAGAGAAGAAAGAGGTCTAAA pLKO.1 4231 3UTR 100% 13.200 9.240 N NIPAL2 n/a
8 TRCN0000433138 ACCAGATTCACATAGCTTATC pLKO_005 4163 3UTR 100% 10.800 7.560 N NIPAL2 n/a
9 TRCN0000121663 GTAGTGCCATTATTTCTGTTA pLKO.1 471 3UTR 100% 4.950 3.465 N NIPAL2 n/a
10 TRCN0000412982 GGCATTTGCAGGAACATATTT pLKO_005 541 3UTR 100% 15.000 9.000 N NIPAL2 n/a
11 TRCN0000122033 GCAGTTCCTGATCTATGTGAT pLKO.1 634 3UTR 100% 4.950 6.930 N NIPAL2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001745598.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13797 pDONR223 100% 2.3% None (many diffs) n/a
2 ccsbBroad304_13797 pLX_304 0% 2.3% V5 (many diffs) n/a
3 TRCN0000466975 CGTACTACTGGTTGTAATCGATAG pLX_317 100% 2.3% V5 (many diffs) n/a
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