Construct: ORF ccsbBroad304_13797

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004167.1_s304c1, BRDN0000404982
Derived from:
ccsbBroadEn_13797
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13797
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 124801 LSM12 LSM12 homolog NM_001369484.1 23.8% 2.4% (many diffs)
2 human 51091 SEPSECS Sep (O-phosphoserine) tRNA:... XM_017008277.1 10.5% 2.6% (many diffs)
3 human 101929130 LOC101929130 uncharacterized LOC101929130 NR_135551.1 9.4% (many diffs)
4 human 83891 SNX25 sorting nexin 25 XM_017008687.1 8.7% 6.7% (many diffs)
5 human 284023 RNF227 ring finger protein 227 NR_152444.1 7.7% (many diffs)
6 human 79979 TRMT2B tRNA methyltransferase 2 ho... XM_017029872.1 6.8% 4% (many diffs)
7 human 79979 TRMT2B tRNA methyltransferase 2 ho... XM_017029873.1 6.8% 4% (many diffs)
8 human 79979 TRMT2B tRNA methyltransferase 2 ho... XM_017029874.1 6.8% 4% (many diffs)
9 human 79979 TRMT2B tRNA methyltransferase 2 ho... XM_017029875.1 6.8% 4% (many diffs)
10 human 79979 TRMT2B tRNA methyltransferase 2 ho... XM_017029858.1 5.2% 3.7% (many diffs)
11 human 79979 TRMT2B tRNA methyltransferase 2 ho... XM_017029859.1 5.2% 3.7% (many diffs)
12 human 79979 TRMT2B tRNA methyltransferase 2 ho... XM_017029860.1 5.2% 3.7% (many diffs)
13 human 79979 TRMT2B tRNA methyltransferase 2 ho... XM_017029861.1 5.2% 3.7% (many diffs)
14 human 100289019 SLC25A25-AS1 SLC25A25 antisense RNA 1 NR_033374.1 4.8% (many diffs)
15 human 23137 SMC5 structural maintenance of c... XR_001746256.1 3.1% (many diffs)
16 human 80975 TMPRSS5 transmembrane serine protea... XR_001747992.1 2.3% (many diffs)
17 human 80975 TMPRSS5 transmembrane serine protea... XR_001747991.1 2.3% (many diffs)
18 human 79815 NIPAL2 NIPA like domain containing 2 XR_001745599.2 2.3% (many diffs)
19 human 79815 NIPAL2 NIPA like domain containing 2 XR_001745598.2 2.3% (many diffs)
20 human 80975 TMPRSS5 transmembrane serine protea... XR_001747990.1 2.3% (many diffs)
21 human 114004397 CA5BP1-CA5B CA5BP1-CA5B readthrough NR_160544.1 2.3% (many diffs)
22 human 101928421 LOC101928421 uncharacterized LOC101928421 XR_927171.3 2% (many diffs)
23 human 101928421 LOC101928421 uncharacterized LOC101928421 XR_927172.3 2% (many diffs)
24 human 101928421 LOC101928421 uncharacterized LOC101928421 XR_242157.4 2% (many diffs)
25 human 23092 ARHGAP26 Rho GTPase activating prote... XR_944320.3 2% (many diffs)
26 human 23092 ARHGAP26 Rho GTPase activating prote... NR_146198.2 2% (many diffs)
27 human 23092 ARHGAP26 Rho GTPase activating prote... XR_944315.3 1.9% (many diffs)
28 human 23092 ARHGAP26 Rho GTPase activating prote... XR_001742047.2 1.9% (many diffs)
29 human 23092 ARHGAP26 Rho GTPase activating prote... XR_001742048.2 1.9% (many diffs)
30 human 23092 ARHGAP26 Rho GTPase activating prote... XR_944314.3 1.9% (many diffs)
31 human 23092 ARHGAP26 Rho GTPase activating prote... XR_944311.3 1.8% (many diffs)
32 human 101928421 LOC101928421 uncharacterized LOC101928421 XR_001745169.2 1.6% (many diffs)
33 human 101928421 LOC101928421 uncharacterized LOC101928421 XR_001745168.2 1.5% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
282
ORF length:
216
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga gtctcactgt attgcccagg ctggagttca gtggcaccat ctcggcttac
121tgcagcctcc acctcccggg ttcaagcgat tctcctgcct cagcctcccg ggtacctggg
181gctacaggcg cccgctacca cacccagcta atttttgtat ttttaataga catgaggttt
241cgccatgttg gccaggctgt tctcgaactc ctgacctcaa atgcccaact ttcttgtaca
301aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag
361ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta

Download FASTA (ORF) (Full)