Transcript: Human XR_001752632.2

PREDICTED: Homo sapiens ATPase family AAA domain containing 5 (ATAD5), transcript variant X5, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ATAD5 (79915)
Length:
5826
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001752632.2
NBCI Gene record:
ATAD5 (79915)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001752632.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000136103 CCAGATTTGTTGAAACGGCAA pLKO.1 4045 3UTR 100% 2.160 3.024 N ATAD5 n/a
2 TRCN0000138769 GCTAAATGTTTCCACGCCCAA pLKO.1 3273 3UTR 100% 2.160 3.024 N ATAD5 n/a
3 TRCN0000419540 TGATTCAGAGAGCCCTATTAG pLKO_005 3465 3UTR 100% 13.200 10.560 N ATAD5 n/a
4 TRCN0000134451 GAACGACCATTAACCCTTTAT pLKO.1 5735 3UTR 100% 13.200 9.240 N ATAD5 n/a
5 TRCN0000420217 TGTTGCCAGCTACCTACAAAT pLKO_005 5581 3UTR 100% 13.200 9.240 N ATAD5 n/a
6 TRCN0000134232 GCCAGTGAACTTATAGGAAAT pLKO.1 4708 3UTR 100% 10.800 7.560 N ATAD5 n/a
7 TRCN0000135019 GCAAGATAAAGTCACCTGAAT pLKO.1 1763 3UTR 100% 4.950 3.465 N ATAD5 n/a
8 TRCN0000074886 AGAGAGAAAGGAGAGACAATT pLKO.1 310 3UTR 100% 13.200 6.600 Y RPS17 n/a
9 TRCN0000291044 AGAGAGAAAGGAGAGACAATT pLKO_005 310 3UTR 100% 13.200 6.600 Y RPS17 n/a
10 TRCN0000265672 AGAGAAAGGAGAGACAATTAT pLKO_005 312 3UTR 100% 15.000 7.500 Y RPS17P16 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001752632.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06900 pDONR223 100% 6.5% None (many diffs) n/a
2 ccsbBroad304_06900 pLX_304 0% 6.5% V5 (many diffs) n/a
3 TRCN0000469943 GTAAATTCATTACACTTATCCACG pLX_317 100% 6.5% V5 (many diffs) n/a
4 ccsbBroadEn_15582 pDONR223 0% 6.5% None (many diffs) n/a
5 ccsbBroad304_15582 pLX_304 0% 6.5% V5 (many diffs) n/a
6 TRCN0000471869 ACCTGATCCCCATTCCCTATATGT pLX_317 92.7% 6.5% V5 (many diffs) n/a
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