Transcript: Mouse XR_001779514.1

PREDICTED: Mus musculus nuclear receptor subfamily 2, group C, member 1 (Nr2c1), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Nr2c1 (22025)
Length:
6125
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001779514.1
NBCI Gene record:
Nr2c1 (22025)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001779514.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000255766 ACCTACAGGCTGTCGCGATTA pLKO_005 4078 3UTR 100% 10.800 15.120 N Nr2c1 n/a
2 TRCN0000222445 CCATTGAAGTTTCCCGAGAAA pLKO.1 939 3UTR 100% 4.950 6.930 N Nr2c1 n/a
3 TRCN0000222447 GCAACTATATTAGCAACGTTT pLKO.1 1712 3UTR 100% 4.950 6.930 N Nr2c1 n/a
4 TRCN0000255767 CAAAGCATCAGGGCGTCATTA pLKO_005 727 3UTR 100% 13.200 9.240 N Nr2c1 n/a
5 TRCN0000255768 TTGCTAAGTAATGCAATTATC pLKO_005 5160 3UTR 100% 13.200 9.240 N Nr2c1 n/a
6 TRCN0000255765 AGGATCCAAAGACTGCGTTAT pLKO_005 823 3UTR 100% 10.800 7.560 N Nr2c1 n/a
7 TRCN0000255764 GGCTGATGAACGCTACCATTA pLKO_005 4121 3UTR 100% 10.800 7.560 N Nr2c1 n/a
8 TRCN0000222446 GCAGGTGTCAACCAGTTGTTT pLKO.1 602 3UTR 100% 5.625 3.938 N Nr2c1 n/a
9 TRCN0000222449 AGATTATATCACCAGGACATA pLKO.1 4047 3UTR 100% 4.950 3.465 N Nr2c1 n/a
10 TRCN0000222448 GCCAGTGTGGTCACATCATTA pLKO.1 1190 3UTR 100% 13.200 7.920 N Nr2c1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001779514.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01709 pDONR223 100% 18.9% None (many diffs) n/a
2 ccsbBroad304_01709 pLX_304 0% 18.9% V5 (many diffs) n/a
3 TRCN0000466565 GTAGGGGTTCACCGAAATCTACAC pLX_317 29.3% 18.9% V5 (many diffs) n/a
4 TRCN0000488735 TATACCCAAGGGAGTGTTTATAAA pLX_317 19% 18.9% V5 (not translated due to prior stop codon) (many diffs) n/a
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