Construct: ORF TRCN0000466565
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013333.1_s317c1
- Derived from:
- ccsbBroadEn_01709
- DNA Barcode:
- GTAGGGGTTCACCGAAATCTACAC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NR2C1 (7181)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466565
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | NM_001032287.3 | 100% | 100% | |
| 2 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | NM_001127362.2 | 96.4% | 96% | 1394_1397delATGC;1399_1400insG;1403_1449delinsGG |
| 3 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XM_011538716.2 | 89.4% | 89% | 1394_1405del;1410_1411delAAinsGG;1413_1563delinsG |
| 4 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XM_006719584.2 | 83.6% | 83.3% | 1394_1419del;1424_1425delTAinsGG;1427_1671delinsG |
| 5 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XM_005269133.2 | 77.8% | 77.5% | (many diffs) |
| 6 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | NM_003297.4 | 77.2% | 76.9% | 1394_1405del;1410_1411delAAinsGG;1413_1809delinsG |
| 7 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XR_001748862.1 | 77.2% | (many diffs) | |
| 8 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XR_245956.1 | 68.8% | 1_243del;1371_1372ins122;1523_1735del | |
| 9 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XR_944700.1 | 66.5% | 1_243del;1207_1208ins166;1479_1691del | |
| 10 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XM_011538717.2 | 61.3% | 61% | (many diffs) |
| 11 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XM_006719585.2 | 47.9% | 47.5% | (many diffs) |
| 12 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XR_001748861.1 | 35.3% | (many diffs) | |
| 13 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XR_001748863.1 | 34.4% | (many diffs) | |
| 14 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XR_429114.2 | 31.8% | (many diffs) | |
| 15 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XR_001748864.1 | 30.8% | (many diffs) | |
| 16 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XR_944699.2 | 30.7% | (many diffs) | |
| 17 | mouse | 22025 | Nr2c1 | nuclear receptor subfamily ... | NM_011629.3 | 64.5% | 65.8% | (many diffs) |
| 18 | mouse | 22025 | Nr2c1 | nuclear receptor subfamily ... | XM_006513592.2 | 64.5% | 65.8% | (many diffs) |
| 19 | mouse | 22025 | Nr2c1 | nuclear receptor subfamily ... | XR_001779514.1 | 18.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1467
- ORF length:
- 1401
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc aaccatagaa gaaattgcac atcaaattat tgaacaacag atgggagaga 121 ttgttacaga gcagcaaact gggcagaaaa tccagattgt gacagcactt gatcataata 181 cccaaggcaa gcagttcatt ctgacaaatc acgacggctc tactccaagc aaagtcattc 241 tggccaggca agattccact ccgggaaaag ttttccttac aactccagat gcagcaggtg 301 tcaaccagtt attttttacc actcctgatc tgtctgcaca acacctgcag ctcctaacag 361 ataattctcc agaccaagga ccaaataagg tttttgatct ttgcgtagta tgtggagaca 421 aagcatcagg acgtcattat ggagcagtaa cttgtgaagg ctgcaaagga ttttttaaaa 481 gaagcatccg aaaaaattta gtatattcat gtcgaggatc aaaggattgt attattaata 541 agcaccaccg aaaccgctgt caatactgca ggttacagag atgtattgcg tttggaatga 601 agcaagactc tgtccaatgt gaaagaaaac ccattgaagt atcacgagaa aaatcttcca 661 actgtgccgc ttcaacagaa aaaatctata tccgaaagga ccttcgtagc ccattaactg 721 caactccaac ttttgtaaca gatagtgaaa gtacaaggtc aacaggactg ttagattcag 781 gaatgttcat gaatattcat ccatctggag taaaaactga gtcagctgtg ctgatgacat 841 cagataaggc tgaatcatgt cagggagatt taagtacatt ggccaatgtg gttacatcat 901 tagcgaatct tggaaaaact aaagatcttt ctcaaaatag taatgaaatg tctatgattg 961 aaagcttaag caatgatgat acctctttgt gtgaatttca agaaatgcag accaacggtg 1021 atgtttcaag ggcatttgac actcttgcaa aagcattgaa TCCTGGAGAG AGCACAGCCT 1081 GCCAGAGCTC AGTAGCGGGC ATGGAAGGAA GTGTACACCT AATCACTGGA GATTCAAGCA 1141 TAAATTACAC CGAAAAAGAG GGGCCACTTC TCAGCGATTC ACATGTAGCT TTCAGGCTCA 1201 CCATGCCTTC TCCTATGCCT GAGTACCTGA ATGTGCACTA CATTGGGGAG TCTGCCTCCA 1261 GACTGCTGTT CTTATCAATG CACTGGGCAC TTTCGATTCC TTCTTTCCAG GCTCTAGGGC 1321 AAGAAAACAG CATATCACTG GTGAAAGCTT ACTGGAATGA ACTTTTTACT CTTGGTCTTG 1381 CCCAGTGCTG GCAAGTGATG AATGTAGCAA CTATATTAGC AACATTTGTC AATTGTCTTC 1441 ACAATAGTCT TCAACAAGCA GAGGGGTACC CAACTTTCTT GTACAAAGTG GTTGATATCG 1501 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 1561 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAGTAGGGGT 1621 TCACCGAAAT CTACACACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 1681 aagatt