Construct: ORF TRCN0000488735
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021555.1_s317c1
- DNA Barcode:
- TATACCCAAGGGAGTGTTTATAAA
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- NR2C1 (7181)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000488735
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | NM_001032287.3 | 100% | 100% | |
| 2 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | NM_001127362.2 | 96.4% | 96% | 1394_1397delATGC;1399_1400insG;1403_1449delinsGG |
| 3 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XM_011538716.2 | 89.4% | 89% | 1394_1405del;1410_1411delAAinsGG;1413_1563delinsG |
| 4 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XM_006719584.2 | 83.6% | 83.3% | 1394_1419del;1424_1425delTAinsGG;1427_1671delinsG |
| 5 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XM_005269133.2 | 77.8% | 77.5% | (many diffs) |
| 6 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | NM_003297.4 | 77.2% | 76.9% | 1394_1405del;1410_1411delAAinsGG;1413_1809delinsG |
| 7 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XR_001748862.1 | 77.2% | (many diffs) | |
| 8 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XR_245956.1 | 68.8% | 1_243del;1371_1372ins122;1523_1735del | |
| 9 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XR_944700.1 | 66.5% | 1_243del;1207_1208ins166;1479_1691del | |
| 10 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XM_011538717.2 | 61.3% | 61% | (many diffs) |
| 11 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XM_006719585.2 | 47.9% | 47.5% | (many diffs) |
| 12 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XR_001748861.1 | 35.3% | (many diffs) | |
| 13 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XR_001748863.1 | 34.4% | (many diffs) | |
| 14 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XR_429114.2 | 31.8% | (many diffs) | |
| 15 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XR_001748864.1 | 30.8% | (many diffs) | |
| 16 | human | 7181 | NR2C1 | nuclear receptor subfamily ... | XR_944699.2 | 30.7% | (many diffs) | |
| 17 | mouse | 22025 | Nr2c1 | nuclear receptor subfamily ... | NM_011629.3 | 64.5% | 65.8% | (many diffs) |
| 18 | mouse | 22025 | Nr2c1 | nuclear receptor subfamily ... | XM_006513592.2 | 64.5% | 65.8% | (many diffs) |
| 19 | mouse | 22025 | Nr2c1 | nuclear receptor subfamily ... | XR_001779514.1 | 18.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 1473
- ORF length:
- 1401
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catggcaacc atagaagaaa ttgcacatca aattattgaa caacagatgg 121 gagagattgt tacagagcag caaactgggc agaaaatcca gattgtgaca gcacttgatc 181 ataataccca aggcaagcag ttcattctga caaatcacga cggctctact ccaagcaaag 241 tcattctggc caggcaagat tccactccgg gaaaagtttt ccttacaact ccagatgcag 301 caggtgtcaa ccagttattt tttaccactc ctgatctgtc tgcacaacac ctgcagctcc 361 taacagataa ttctccagac caaggaccaa ataaggtttt tgatctttgc gtagtatgtg 421 gagacaaagc atcaggacgt cattatggag cagtaacttg tgaaggctgc aaaggatttt 481 ttaaaagaag catccgaaaa aatttagtat attcatgtcg aggatcaaag gattgtatta 541 ttaataagca ccaccgaaac cgctgtcaat actgcaggtt acagagatgt attgcgtttg 601 gaatgaagca agactctgtc caatgtgaaa gaaaacccat tgaagtatca cgagaaaaat 661 cttccaactg tgccgcttca acagaaaaaa tctatatccg aaaggacctt cgtagcccat 721 taactgcaac tccaactttt gtaacagata gtgaaagtac aaggtcaaca ggactgttag 781 attcaggaat gttcatgaat attcatccat ctggagtaaa aactgagtca gctgtgctga 841 tgacatcaga taaggctgaa tcatgtcagg gagatttaag tacattggcc aatgtggtta 901 catcattagc gaatcttgga aaaactaaag atctttctca aaatagtaat gaaatgtcta 961 tgattgaaag cttaagcaat gatgatacct ctttgtgtga atttcaagaa atgcagacca 1021 acggtgatgt ttcaagggca tttgacactc ttgcaaaagc attgaatcct ggagagagca 1081 cagcctgcca gagctcagta gcgggcatgg aaggaagtgt acacctaatc actggagatt 1141 caagcataaa ttacaccgaa aaagaggggc cacttctcag cgattcacat gtagctttca 1201 ggctcaccat gccTTCTCCT ATGCCTGAGT ACCTGAATGT GCACTACATT GGGGAGTCTG 1261 CCTCCAGACT GCTGTTCTTA TCAATGCACT GGGCACTTTC GATTCCTTCT TTCCAGGCTC 1321 TAGGGCAAGA AAACAGCATA TCACTGGTGA AAGCTTACTG GAATGAACTT TTTACTCTTG 1381 GTCTTGCCCA GTGCTGGCAA GTGATGAATG TAGCAACTAT ATTAGCAACA TTTGTCAATT 1441 GTCTTCACAA TAGTCTTCAA CAAGCAGAGG GGTAGAACCC AGCTTTCTTG TACAAAGTGG 1501 TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA 1561 CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG 1621 ATATACCCAA GGGAGTGTTT ATAAAACGCG TTAAGTCgac aatcaacctc tggattacaa 1681 aatttgtgaa agatt