Transcript: Mouse XR_001780560.1

PREDICTED: Mus musculus predicted gene 9222 (Gm9222), transcript variant X9, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Gm9222 (668525)
Length:
3369
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001780560.1
NBCI Gene record:
Gm9222 (668525)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001780560.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000093237 GAAGAGTGGAATTTGCTGAAT pLKO.1 510 3UTR 100% 4.950 2.970 N Gm4983 n/a
2 TRCN0000093236 CCTGTGGAAACACAAGGAGTT pLKO.1 667 3UTR 100% 4.050 2.430 N Gm4983 n/a
3 TRCN0000243552 ACTGGAACCTCACTGTTATAG pLKO_005 574 3UTR 100% 13.200 6.600 Y Gm9222 n/a
4 TRCN0000243549 CCCAGAAGAGTCTCTACAAAG pLKO_005 535 3UTR 100% 10.800 5.400 Y Gm9222 n/a
5 TRCN0000095843 GAGGATGCAGTGACTTATGAT pLKO.1 465 3UTR 100% 5.625 2.813 Y 2410018L13Rik n/a
6 TRCN0000095841 CCTACTGGAACCTCACTGTTA pLKO.1 571 3UTR 100% 4.950 2.475 Y 2410018L13Rik n/a
7 TRCN0000095842 GACATTGTCAAAGTTCAAGAA pLKO.1 625 3UTR 100% 4.950 2.475 Y 2410018L13Rik n/a
8 TRCN0000186940 GACTGTGGACAATTTCAAGAT pLKO.1 751 3UTR 100% 4.950 2.475 Y LOC382716 n/a
9 TRCN0000093238 GAGTCTCTACAAAGATGTGAT pLKO.1 542 3UTR 100% 4.950 2.475 Y Gm4983 n/a
10 TRCN0000096028 TCACTGTTATAGGCTACACTT pLKO.1 583 3UTR 100% 4.950 2.475 Y n/a
11 TRCN0000204102 GTTCATCATTGCTCTGAGCAT pLKO.1 871 3UTR 100% 2.640 1.320 Y LOC382716 n/a
12 TRCN0000093234 CCACAAGTTGTCCTCTGAATT pLKO.1 1841 3UTR 100% 0.000 0.000 Y Gm4983 n/a
13 TRCN0000096025 GTGACTTATGATGATGTGCAT pLKO.1 474 3UTR 100% 2.640 1.320 Y n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001780560.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.