Transcript: Mouse XR_001783168.1

PREDICTED: Mus musculus CDK5 regulatory subunit associated protein 1 (Cdk5rap1), transcript variant X2, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cdk5rap1 (66971)
Length:
2104
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001783168.1
NBCI Gene record:
Cdk5rap1 (66971)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001783168.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000190615 GAACCGCTTACATCAGCTCAA pLKO.1 655 3UTR 100% 4.050 5.670 N Cdk5rap1 n/a
2 TRCN0000247145 ATTCGGAAGTCCAGTTCAATA pLKO_005 1116 3UTR 100% 13.200 10.560 N Cdk5rap1 n/a
3 TRCN0000247144 TGCCATGCGGAGAGGATATTC pLKO_005 1378 3UTR 100% 13.200 10.560 N Cdk5rap1 n/a
4 TRCN0000233136 GGCTTTACCACCAACTATAAA pLKO_005 1163 3UTR 100% 15.000 10.500 N CDK5RAP1 n/a
5 TRCN0000247141 GGCTTTACCACCAACTATAAA pLKO_005 1163 3UTR 100% 15.000 10.500 N Cdk5rap1 n/a
6 TRCN0000247142 GGATGAGACCTACGCAGATAT pLKO_005 880 3UTR 100% 13.200 9.240 N Cdk5rap1 n/a
7 TRCN0000247143 TTCTGCCTTTGTATCCATTAT pLKO_005 931 3UTR 100% 13.200 9.240 N Cdk5rap1 n/a
8 TRCN0000190761 GCAAGCAGCAAATGTGCTTCT pLKO.1 853 3UTR 100% 0.405 0.284 N Cdk5rap1 n/a
9 TRCN0000191987 GAAGCATATGTGGCATTAGTT pLKO.1 1403 3UTR 100% 0.000 0.000 N Cdk5rap1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001783168.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08334 pDONR223 100% 71.5% None (many diffs) n/a
2 ccsbBroad304_08334 pLX_304 0% 71.5% V5 (many diffs) n/a
3 TRCN0000471620 GGCATCTGGAACCAATTACATAAT pLX_317 28.1% 71.5% V5 (many diffs) n/a
4 ccsbBroadEn_12004 pDONR223 100% 61.7% None (many diffs) n/a
5 ccsbBroad304_12004 pLX_304 0% 61.7% V5 (many diffs) n/a
6 TRCN0000469616 CAGTGATACCCTATTGCCGTCGAA pLX_317 25.4% 61.7% V5 (many diffs) n/a
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