Transcript: Human XR_002956780.1

PREDICTED: Homo sapiens alkaline ceramidase 2 (ACER2), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ACER2 (340485)
Length:
1136
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002956780.1
NBCI Gene record:
ACER2 (340485)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002956780.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000050686 GCTAAAGAGGTGTGACAACAT pLKO.1 653 3UTR 100% 4.950 3.960 N ACER2 n/a
2 TRCN0000050684 GCTTGTTTCGTCAGTATGCAA pLKO.1 310 3UTR 100% 3.000 2.100 N ACER2 n/a
3 TRCN0000050685 GCTGCTGTCATCCTTCAACTT pLKO.1 758 3UTR 100% 4.950 2.970 N ACER2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002956780.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13599 pDONR223 100% 47.7% None 1_305del;799_1043del;1136_1137ins92 n/a
2 ccsbBroad304_13599 pLX_304 0% 47.7% V5 1_305del;799_1043del;1136_1137ins92 n/a
3 TRCN0000476312 CCTAAAAAGTTAGTATCCAATATA pLX_317 53.6% 47.7% V5 1_305del;799_1043del;1136_1137ins92 n/a
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