Transcript: Human XR_002959009.1

PREDICTED: Homo sapiens uncharacterized LOC107984092 (LOC107984092), ncRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LOC107984092 (107984092)
Length:
4155
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_002959009.1
NBCI Gene record:
LOC107984092 (107984092)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_002959009.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000430981 GCCACCATGCCTGGCTAATTT pLKO_005 2496 3UTR 100% 15.000 7.500 Y GTF2IRD2 n/a
2 TRCN0000116227 CCTCCCAAAGTTCTGGGATTA pLKO.1 1158 3UTR 100% 1.080 0.540 Y ELOVL7 n/a
3 TRCN0000164591 CCTCCCAAAGTTCTGGGATTA pLKO.1 1158 3UTR 100% 1.080 0.540 Y TNNI1 n/a
4 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 2598 3UTR 100% 5.625 2.813 Y KLHL30 n/a
5 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 2598 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_002959009.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12783 pDONR223 100% 4.4% None (many diffs) n/a
2 ccsbBroad304_12783 pLX_304 0% 4.4% V5 (many diffs) n/a
3 TRCN0000478282 TATCTGCTCCACCGGGCTCCGTTG pLX_317 100% 4.4% V5 (many diffs) n/a
4 ccsbBroadEn_11616 pDONR223 100% 4.1% None (many diffs) n/a
5 ccsbBroad304_11616 pLX_304 0% 4.1% V5 (many diffs) n/a
6 TRCN0000467678 CCTCCCCTCACACCTCGTCAAAAC pLX_317 100% 4.1% V5 (many diffs) n/a
7 ccsbBroadEn_15487 pDONR223 0% 3.7% None (many diffs) n/a
8 ccsbBroad304_15487 pLX_304 0% 3.7% V5 (many diffs) n/a
9 TRCN0000473708 TAGCATCGTTGCACGCGCACGTTG pLX_317 100% 3.7% V5 (many diffs) n/a
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