Transcript: Mouse XR_873606.2

PREDICTED: Mus musculus RING1 and YY1 binding protein, pseudogene (Rybp-ps), misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Rybp-ps (628746)
Length:
1722
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_873606.2
NBCI Gene record:
Rybp-ps (628746)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_873606.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000239842 ACAGCGCCGAAGCCTTTAAAT pLKO_005 238 3UTR 100% 15.000 7.500 Y Rybp-ps n/a
2 TRCN0000007943 GCCAAGTATTCGTGTAAATTA pLKO.1 1665 3UTR 100% 15.000 7.500 Y RYBP n/a
3 TRCN0000077219 CCAGGAAACCTCGCATCAATT pLKO.1 292 3UTR 100% 13.200 6.600 Y Rybp n/a
4 TRCN0000301400 CCAGGAAACCTCGCATCAATT pLKO_005 292 3UTR 100% 13.200 6.600 Y Rybp n/a
5 TRCN0000239843 TGGGCAACGTCACCGTCATTA pLKO_005 625 3UTR 100% 13.200 6.600 Y Rybp-ps n/a
6 TRCN0000315343 TGGGCAACGTCACCGTCATTA pLKO_005 625 3UTR 100% 13.200 6.600 Y RYBP n/a
7 TRCN0000239844 CAGGAAACCTCGCATCAATTC pLKO_005 293 3UTR 100% 10.800 5.400 Y Rybp-ps n/a
8 TRCN0000239840 GCGACATGTCAGCAGTGAATG pLKO_005 790 3UTR 100% 10.800 5.400 Y Rybp-ps n/a
9 TRCN0000304267 GATCCTCCTAGTGAAGCTAAC pLKO_005 495 3UTR 100% 6.000 3.000 Y Rybp n/a
10 TRCN0000077221 CAGCAGTGAATGATGAATCTT pLKO.1 799 3UTR 100% 5.625 2.813 Y Rybp n/a
11 TRCN0000301401 CAGCAGTGAATGATGAATCTT pLKO_005 799 3UTR 100% 5.625 2.813 Y Rybp n/a
12 TRCN0000304304 ACCAAAGTCTGATATTCTGAA pLKO_005 473 3UTR 100% 4.950 2.475 Y Rybp n/a
13 TRCN0000007945 CACCGTCATTATCACAGACTT pLKO.1 635 3UTR 100% 4.950 2.475 Y RYBP n/a
14 TRCN0000140823 GAAGGAGAAGAAGGAGAAGGT pLKO.1 368 3UTR 100% 2.640 1.320 Y PTMS n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_873606.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07885 pDONR223 100% 37% None (many diffs) n/a
2 ccsbBroad304_07885 pLX_304 0% 37% V5 (many diffs) n/a
3 TRCN0000478796 GCTGCACCCCAATCTCTGACCCTT pLX_317 56.2% 37% V5 (many diffs) n/a
4 ccsbBroadEn_07884 pDONR223 100% 37% None (many diffs) n/a
5 ccsbBroad304_07884 pLX_304 0% 37% V5 (many diffs) n/a
6 TRCN0000471677 TCTGCTGTATCACGGGGTGGGTTT pLX_317 59.6% 37% V5 (many diffs) n/a
Download CSV