Transcript: Human XR_944712.2

PREDICTED: Homo sapiens nucleoporin 37 (NUP37), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
NUP37 (79023)
Length:
1678
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_944712.2
NBCI Gene record:
NUP37 (79023)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_944712.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000152222 CATTGCCTCCAGTAATCAAAT pLKO.1 410 3UTR 100% 13.200 9.240 N NUP37 n/a
2 TRCN0000280938 CATTGCCTCCAGTAATCAAAT pLKO_005 410 3UTR 100% 13.200 9.240 N NUP37 n/a
3 TRCN0000151312 GAATCAGAACAAGTGCCATTA pLKO.1 918 3UTR 100% 10.800 7.560 N NUP37 n/a
4 TRCN0000280941 GAATCAGAACAAGTGCCATTA pLKO_005 918 3UTR 100% 10.800 7.560 N NUP37 n/a
5 TRCN0000153319 GAAGAATGGAACAATCCGGTT pLKO.1 860 3UTR 100% 2.160 1.512 N NUP37 n/a
6 TRCN0000280871 GAAGAATGGAACAATCCGGTT pLKO_005 860 3UTR 100% 2.160 1.512 N NUP37 n/a
7 TRCN0000156008 CAGGAAGAAGAAGCAGACGTT pLKO.1 301 3UTR 100% 2.640 1.584 N NUP37 n/a
8 TRCN0000280940 CAGGAAGAAGAAGCAGACGTT pLKO_005 301 3UTR 100% 2.640 1.584 N NUP37 n/a
9 TRCN0000151233 GAAGATTATGTGCATGTGGTA pLKO.1 193 3UTR 100% 2.640 1.584 N NUP37 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_944712.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08906 pDONR223 100% 58.2% None (many diffs) n/a
2 ccsbBroad304_08906 pLX_304 0% 58.2% V5 (not translated due to prior stop codon) (many diffs) n/a
3 TRCN0000465567 CTAAAACCATGTCTCAATATCTTT pLX_317 31.6% 58.2% V5 (not translated due to prior stop codon) (many diffs) n/a
4 TRCN0000487996 GCGGGCGTCCTAGTAGTAAACTCT pLX_317 45.3% 40.2% V5 (not translated due to prior stop codon) 1_450del;688_845del;1284_1678del n/a
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