Construct: ORF TRCN0000465402

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019018.2_s317c1
Derived from:
ccsbBroadEn_14640
DNA Barcode:
CTAGCGAGATACATAGTTCGCTAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FGFR2 (2263)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465402
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2263 FGFR2 fibroblast growth factor re... NM_022970.3 100% 100%
2 human 2263 FGFR2 fibroblast growth factor re... XM_006717708.3 97.5% 97.5% 1_57del;1341_1342insGTAACA
3 human 2263 FGFR2 fibroblast growth factor re... NM_000141.4 96.7% 96.7% (many diffs)
4 human 2263 FGFR2 fibroblast growth factor re... NM_001320658.2 96.5% 96.4% (many diffs)
5 human 2263 FGFR2 fibroblast growth factor re... NM_001144913.1 93.5% 93.4% 2304_2305insGA;2307_2307delCins158
6 human 2263 FGFR2 fibroblast growth factor re... XM_006717710.4 93.4% 93.3% (many diffs)
7 human 2263 FGFR2 fibroblast growth factor re... XM_017015920.2 93.2% 93.1% (many diffs)
8 human 2263 FGFR2 fibroblast growth factor re... XM_017015921.2 90.1% 89.9% (many diffs)
9 human 2263 FGFR2 fibroblast growth factor re... XM_024447890.1 87.1% 87.1% 1_57del;164_165ins267
10 human 2263 FGFR2 fibroblast growth factor re... XM_024447888.1 86.9% 86.9% 1_57del;164_165ins267;1074_1075insGTAACA
11 human 2263 FGFR2 fibroblast growth factor re... NM_001144914.1 86.2% 86.2% 747_748ins339
12 human 2263 FGFR2 fibroblast growth factor re... NM_023029.2 86% 85.9% (many diffs)
13 human 2263 FGFR2 fibroblast growth factor re... NM_001144917.2 85.7% 85.7% 939_940ins351
14 human 2263 FGFR2 fibroblast growth factor re... XM_024447887.1 84.1% 83.9% (many diffs)
15 human 2263 FGFR2 fibroblast growth factor re... XM_024447891.1 84% 83.9% 1_57del;166_167ins345
16 human 2263 FGFR2 fibroblast growth factor re... XM_024447889.1 83.8% 83.7% (many diffs)
17 human 2263 FGFR2 fibroblast growth factor re... NM_001144916.1 82.9% 82.6% (many diffs)
18 human 2263 FGFR2 fibroblast growth factor re... NM_001144919.2 82.6% 82.6% 107_108ins267;2037_2038insGA;2040_2040delCins158
19 human 2263 FGFR2 fibroblast growth factor re... NM_001144918.2 82.6% 82.4% (many diffs)
20 human 2263 FGFR2 fibroblast growth factor re... NM_001144915.1 81.3% 79.9% (many diffs)
21 human 2263 FGFR2 fibroblast growth factor re... XM_017015924.2 81% 80.7% (many diffs)
22 human 2263 FGFR2 fibroblast growth factor re... XM_017015925.2 76.5% 76.1% (many diffs)
23 human 2263 FGFR2 fibroblast growth factor re... NM_001320654.1 68.3% 66.2% (many diffs)
24 human 2263 FGFR2 fibroblast growth factor re... XM_024447892.1 52.4% 52.4% 0_1ins1173
25 human 2263 FGFR2 fibroblast growth factor re... NR_073009.2 51.1% (many diffs)
26 mouse 14183 Fgfr2 fibroblast growth factor re... XM_006507349.2 89.4% 95.2% (many diffs)
27 mouse 14183 Fgfr2 fibroblast growth factor re... XM_011241673.2 89.4% 95.2% (many diffs)
28 mouse 14183 Fgfr2 fibroblast growth factor re... XM_017321975.1 89.4% 95.2% (many diffs)
29 mouse 14183 Fgfr2 fibroblast growth factor re... XM_006507350.3 89.2% 95% (many diffs)
30 mouse 14183 Fgfr2 fibroblast growth factor re... NM_010207.2 86.6% 92.1% (many diffs)
31 mouse 14183 Fgfr2 fibroblast growth factor re... XM_011241674.2 86.4% 91.9% (many diffs)
32 mouse 14183 Fgfr2 fibroblast growth factor re... XM_006507352.2 85.6% 90.9% (many diffs)
33 mouse 14183 Fgfr2 fibroblast growth factor re... XM_017321976.1 85.4% 90.7% (many diffs)
34 mouse 14183 Fgfr2 fibroblast growth factor re... XM_017321977.1 82.6% 87.6% (many diffs)
35 mouse 14183 Fgfr2 fibroblast growth factor re... XM_006507354.3 79.6% 85.3% (many diffs)
36 mouse 14183 Fgfr2 fibroblast growth factor re... XM_011241676.2 79.3% 85.1% (many diffs)
37 mouse 14183 Fgfr2 fibroblast growth factor re... NM_201601.2 77% 82.8% (many diffs)
38 mouse 14183 Fgfr2 fibroblast growth factor re... XM_011241675.2 76.8% 82.3% (many diffs)
39 mouse 14183 Fgfr2 fibroblast growth factor re... XM_011241677.2 76.7% 82.6% (many diffs)
40 mouse 14183 Fgfr2 fibroblast growth factor re... XM_006507357.3 74.3% 79.8% (many diffs)
41 mouse 14183 Fgfr2 fibroblast growth factor re... NM_001347638.1 74% 79.5% (many diffs)
42 mouse 14183 Fgfr2 fibroblast growth factor re... XR_001785477.1 33.7% (many diffs)
43 mouse 14183 Fgfr2 fibroblast growth factor re... XR_001785478.1 33.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2535
ORF length:
2466
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggtcagctgg ggtcgtttca tctgcctggt cgtggtcacc atggcaacct
121tgtccctggc ccggccctcc ttcagtttag ttgaggatac cacattagag ccagaagagc
181caccaaccaa ataccaaatc tctcaaccag aagtgtacgt ggctgcgcca ggggagtcgc
241tagaggtgcg ctgcctgttg aaagatgccg ccgtgatcag ttggactaag gatggggtgc
301acttggggcc caacaatagg acagtgctta ttggggagta cttgcagata aagggcgcca
361cgcctagaga ctccggcctc tatgcttgta ctgccagtag gactgtagac agtgaaactt
421ggtacttcat ggtgaatgtc acagatgcca tctcatccgg agatgatgag gatgacaccg
481atggtgcgga agattttgtc agtgagaaca gtaacaacaa gagagcacca tactggacca
541acacagaaaa gatggaaaag cggctccatg ctgtgcctgc ggccaacact gtcaagtttc
601gctgcccagc cggggggaac ccaatgccaa ccatgcggtg gctgaaaaac gggaaggagt
661ttaagcagga gcatcgcatt ggaggctaca aggtacgaaa ccagcactgg agcctcatta
721tggaaagtgt ggtcccatct gacaagggaa attatacctg tgtagtggag aatgaatacg
781ggtccatcaa tcacacgtac cacctggatg ttgtggagcg atcgcctcac cggcccatcc
841tccaagccgg actgccggca aatgcctcca cagtggtcgg aggagacgta gagtttgtct
901gcaaggttta cagtgatgcc cagccccaca tccagtggat caagcacgtg gaaaagaacg
961gcagtaaata cgggcccgac gggctgccct acctcaaggt tctcaagcac tcggggataa
1021atagttccaa tgcagaagtg ctggctctgt tcaatgtgac cgaggcggat gctggggaat
1081atatatgtaa ggtctccaat tatatagggc aggccaacca gtctgcctgg ctcactgtcc
1141tgccaaaaca gcaagcgcct ggaagagaaa aggagattac agcttcccca gactacctgg
1201agatagccat ttactgcata ggggtcttct taatcgcctg tatggtggta acagtcatcc
1261tgtgccgaat gaagaacacg accaagaagc cagacttcag cagccagccg gctgtgcaca
1321agctgaccaa acgtatcccc ctgcggagac aggtaacagt ttcggctgag tccagctcct
1381ccatgaactc caacaccccg ctggtgagga taacaacacg cctctcttca acggcagaca
1441cccccatgct ggcaggggtc tccgagtatg aacttccaga ggacccaaaa tgggagtttc
1501caagagataa gctgacactg ggcaagcccc tgggagaagg ttgctttggg caagtggtca
1561tggcggaagc agtgggaatt gacaaagaca agcccaagga ggcggtcacc gtggccgtga
1621agatgttgaa agatgatgcc acagagaaag acctttctga tctggtgtca gagatggaga
1681tgatgaagat gattgggaaa cacaagaata tcataaatct tcttggagcc tgcacacagg
1741atgggcctct ctatgtcata gttgagtatg cctctaaagg caacctccga gaatacctcc
1801gagcccggag gccacccggg atggagtact cctatgacat taaccgtgtt cctgaggagc
1861agatgacctt caaggacttg gtgtcatgca cctaccagct ggccagaggc atggagtact
1921tggcttccca aaaatgtatt catcgagatt tagcagccag aaatgttttg gtaacagaaa
1981acaatgtgat gaaaatagca gactttggac tcgccagaga tatcaacaat atagactatt
2041acaaaaagac caccaatggg cggcttccag tcaagtggat ggctccagaa gccctgtttg
2101atagagtata cactcatcag agtgatgtct ggtccttcgg ggtgttaatg tgggagatct
2161tcactttagg gggctcgccc tacccaggga ttcccgtgga ggaacttttt aagctgctga
2221aggaaggaca cagaatggat aagccagcca actgcaccaa cgaactgtac atgatgatga
2281gggactgttg gcatgcagtg cccTCCCAGA GACCAACGTT CAAGCAGTTG GTAGAAGACT
2341TGGATCGAAT TCTCACTCTC ACAACCAATG AGGAATACTT GGACCTCAGC CAACCTCTCG
2401AACAGTATTC ACCTAGTTAC CCTGACACAA GAAGTTCTTG TTCTTCAGGA GATGATTCTG
2461TTTTTTCTCC AGACCCCATG CCTTACGAAC CATGCCTTCC TCAGTATCCA CACATAAACG
2521GCAGTGTTAA AACACCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
2581ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
2641CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGACTA GCGAGATACA TAGTTCGCTA
2701CACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)