Construct: ORF TRCN0000466070
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004485.1_s317c1
- Derived from:
- ccsbBroadEn_11201
- DNA Barcode:
- CGATGCCGCGCTCGGGAAGCGGAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NR2C2 (7182)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466070
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7182 | NR2C2 | nuclear receptor subfamily ... | NM_003298.5 | 85.6% | 83.8% | (many diffs) |
| 2 | human | 7182 | NR2C2 | nuclear receptor subfamily ... | XM_011534064.3 | 85.6% | 83.8% | (many diffs) |
| 3 | human | 7182 | NR2C2 | nuclear receptor subfamily ... | XM_011534065.3 | 85.6% | 83.8% | (many diffs) |
| 4 | human | 7182 | NR2C2 | nuclear receptor subfamily ... | XM_011534066.3 | 85.6% | 83.8% | (many diffs) |
| 5 | human | 7182 | NR2C2 | nuclear receptor subfamily ... | NM_001291694.2 | 82.6% | 80.8% | (many diffs) |
| 6 | human | 7182 | NR2C2 | nuclear receptor subfamily ... | XM_017007120.1 | 82.6% | 80.8% | (many diffs) |
| 7 | human | 7182 | NR2C2 | nuclear receptor subfamily ... | XM_011534058.3 | 81.3% | 79.6% | (many diffs) |
| 8 | human | 7182 | NR2C2 | nuclear receptor subfamily ... | XM_011534059.2 | 81.3% | 79.6% | (many diffs) |
| 9 | human | 7182 | NR2C2 | nuclear receptor subfamily ... | XM_011534061.3 | 81.3% | 79.6% | (many diffs) |
| 10 | human | 7182 | NR2C2 | nuclear receptor subfamily ... | XM_017007118.2 | 81.3% | 79.6% | (many diffs) |
| 11 | human | 7182 | NR2C2 | nuclear receptor subfamily ... | XM_017007119.1 | 81.3% | 79.6% | (many diffs) |
| 12 | human | 7182 | NR2C2 | nuclear receptor subfamily ... | XM_011534063.3 | 78.3% | 76.7% | (many diffs) |
| 13 | human | 7182 | NR2C2 | nuclear receptor subfamily ... | XM_024453739.1 | 53.5% | 52.1% | (many diffs) |
| 14 | mouse | 22026 | Nr2c2 | nuclear receptor subfamily ... | NM_011630.3 | 76.6% | 79.3% | (many diffs) |
| 15 | mouse | 22026 | Nr2c2 | nuclear receptor subfamily ... | XM_006505904.3 | 76.6% | 79.3% | (many diffs) |
| 16 | mouse | 22026 | Nr2c2 | nuclear receptor subfamily ... | XM_006505905.3 | 76.6% | 79.3% | (many diffs) |
| 17 | mouse | 22026 | Nr2c2 | nuclear receptor subfamily ... | XM_006505906.3 | 76.6% | 79.3% | (many diffs) |
| 18 | mouse | 22026 | Nr2c2 | nuclear receptor subfamily ... | NM_001347342.1 | 72.7% | 75.3% | (many diffs) |
| 19 | mouse | 22026 | Nr2c2 | nuclear receptor subfamily ... | XM_006505902.2 | 72.7% | 75.3% | (many diffs) |
| 20 | mouse | 22026 | Nr2c2 | nuclear receptor subfamily ... | XM_017321517.1 | 49.8% | 51.2% | (many diffs) |
| 21 | mouse | 22026 | Nr2c2 | nuclear receptor subfamily ... | XM_017321518.1 | 49.8% | 51.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1656
- ORF length:
- 1590
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgac cagcccctcc ccacgcatcc agataatctc caccgactct gctgtagcct 121 cacctcagcg cattcagggc tctgaacctg cctctggccc attgagtgtt ttcacatctt 181 tgaacaaaga gaagattgtc acagaccagc agacaggaca gaaaatccag atagtcaccg 241 cagtggacgc ctccggatcc cccaaacagc agttcaccct gaccagccca gatggagctg 301 gaactgggaa ggtgatcctg gcttccccag agacatccag cgccaagcaa ctcatattca 361 ccacctcaga caacctcgtc cctggcagga tccagattgt cacggattct gcctctgtgg 421 agcgtttact ggggaagacg gacgtccagc ggccccaggt ggtagagtac tgtgtggtct 481 gtggcgacaa agcctccggc cgtcactatg gggctgtcag ttgtgaaggt tgcaaaggtt 541 tcttcaaaag gagtgtgagg aaaaatttga cctacagctg ccggagcaac caagactgca 601 tcatcaataa acatcaccgg aaccgctgtc agttttgccg gctgaaaaaa tgcttagaga 661 tgggcatgaa aatggaatct gtgcagagta aacggaagcc cttcgatgtg caacgggaga 721 aaccaagcaa ttgtgctgct tcaactgaga aaatctatat ccggaaagac ctgagaagtc 781 ccctgatagc tactcccacg tttgtggcag acaaagatgg agcaagacaa acaggtcttc 841 ttgatccagg gatgcttgtg aacatccagc agcctttgat acgtgaggat ggtacagttc 901 tcctggccac ggattctaag gctgaaacaa gccagggagc tctgggcaca ctggcaaatg 961 tagtgacctc ccttgccaac ctaagtgaat ctttgaacaa cggtgacact tcagaaatcc 1021 agccagagga ccagtctgca agtgagataa ctcgggcatt tgatacctta gctaaagcac 1081 ttaataccac agacagctcc tcttctccaa gcttggcaga tgggatagac accagtggag 1141 gagggagcat ccacgtcatc agcagagacc agtcgacacc catcattgag gttgaaggcc 1201 ccctcctttc agacacacac gtcacattta agctaacaat gcccagtcca atgccagagt 1261 acctcaacgt gcactacatc tgtgagtctg catcccgtct gcttttcctc tcaatgcact 1321 gggctcggtc aaTCCCAGCC TTTCAGGCAC TTGGGCAGGA CTGCAACACC AGCCTTGTGC 1381 GGGCCTGCTG GAATGAGCTC TTCACCCTCG GCCTGGCCCA GTGTGCCCAG GTCATGAGTC 1441 TCTCCACCAT CCTGGCTGCC ATTGTCAACC ACCTGCAGAA CAGCATCCAG GAAGATAAAC 1501 TTTCTGGTGA CCGGATAAAG CAAGTCATGG AGCACATCTG GAAGCTGCAG GAGTTCTGTA 1561 ACAGCATGGC GAAGCTGGAT ATAGATGGCT ATGAGTATGC ATACCTTAAA GCTATAGTTC 1621 TCTTTAGCCC CGGTAAGATA TGCGGTGGGG ATGCATGCCC AACTTTCTTG TACAAAGTGG 1681 TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA 1741 CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG 1801 ACGATGCCGC GCTCGGGAAG CGGATACGCG TTAAGTCgac aatcaacctc tggattacaa 1861 aatttgtgaa agatt