Construct: ORF TRCN0000466247
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015966.1_s317c1
- Derived from:
- ccsbBroadEn_12795
- DNA Barcode:
- ATCAGCAGGTCACACTGTTGAGTG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NBPF3 (84224)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466247
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 343505 | NBPF7 | NBPF member 7 | XM_017001186.1 | 71.2% | 49.7% | (many diffs) |
2 | human | 343505 | NBPF7 | NBPF member 7 | NM_001047980.2 | 56.6% | 38.7% | (many diffs) |
3 | human | 84224 | NBPF3 | NBPF member 3 | XM_006710957.1 | 55.5% | 40.8% | (many diffs) |
4 | human | 84224 | NBPF3 | NBPF member 3 | NM_001256416.3 | 54.3% | 39.2% | (many diffs) |
5 | human | 84224 | NBPF3 | NBPF member 3 | NM_032264.5 | 52.3% | 38.5% | (many diffs) |
6 | human | 102724250 | LOC102724250 | neuroblastoma breakpoint fa... | XM_017030107.2 | 51.2% | 32% | (many diffs) |
7 | human | 84224 | NBPF3 | NBPF member 3 | XM_017002500.1 | 46.2% | 32% | (many diffs) |
8 | human | 84224 | NBPF3 | NBPF member 3 | XM_017002501.1 | 46.2% | 32% | (many diffs) |
9 | human | 84224 | NBPF3 | NBPF member 3 | XM_017002502.1 | 46.2% | 32% | (many diffs) |
10 | human | 200030 | NBPF11 | NBPF member 11 | XM_024453859.1 | 44.5% | 29.8% | (many diffs) |
11 | human | 84224 | NBPF3 | NBPF member 3 | NM_001330381.2 | 43.5% | 30.2% | (many diffs) |
12 | human | 84224 | NBPF3 | NBPF member 3 | XM_006710958.1 | 43.5% | 30.2% | (many diffs) |
13 | human | 84224 | NBPF3 | NBPF member 3 | XM_006710959.2 | 43.5% | 30.2% | (many diffs) |
14 | human | 84224 | NBPF3 | NBPF member 3 | XM_011542276.1 | 43.5% | 30.2% | (many diffs) |
15 | human | 84224 | NBPF3 | NBPF member 3 | XM_011542277.1 | 43.5% | 30.2% | (many diffs) |
16 | human | 84224 | NBPF3 | NBPF member 3 | XM_011542278.1 | 43.5% | 30.2% | (many diffs) |
17 | human | 84224 | NBPF3 | NBPF member 3 | XM_011542281.1 | 43.5% | 30.2% | (many diffs) |
18 | human | 84224 | NBPF3 | NBPF member 3 | XM_017002499.2 | 43.5% | 30.2% | (many diffs) |
19 | human | 84224 | NBPF3 | NBPF member 3 | XM_024450188.1 | 43.5% | 30.2% | (many diffs) |
20 | human | 84224 | NBPF3 | NBPF member 3 | XM_024450190.1 | 43.5% | 30.2% | (many diffs) |
21 | human | 84224 | NBPF3 | NBPF member 3 | NM_001256417.3 | 41.3% | 28.3% | (many diffs) |
22 | human | 200030 | NBPF11 | NBPF member 11 | XR_002959669.1 | 39.6% | (many diffs) | |
23 | human | 200030 | NBPF11 | NBPF member 11 | XR_002959662.1 | 39.5% | (many diffs) | |
24 | human | 200030 | NBPF11 | NBPF member 11 | XR_002959670.1 | 39% | (many diffs) | |
25 | human | 284565 | NBPF15 | NBPF member 15 | NM_001170755.2 | 34.7% | 24.1% | (many diffs) |
26 | human | 284565 | NBPF15 | NBPF member 15 | NM_173638.4 | 34.7% | 24.1% | (many diffs) |
27 | human | 200030 | NBPF11 | NBPF member 11 | XM_024453858.1 | 34.4% | 23.1% | (many diffs) |
28 | human | 200030 | NBPF11 | NBPF member 11 | NM_001101663.4 | 33.7% | 22.7% | (many diffs) |
29 | human | 200030 | NBPF11 | NBPF member 11 | NM_183372.6 | 31.7% | 21.4% | (many diffs) |
30 | human | 102724250 | LOC102724250 | neuroblastoma breakpoint fa... | XM_024452498.1 | 31.2% | 20.7% | (many diffs) |
31 | human | 400818 | NBPF9 | NBPF member 9 | NM_001037675.3 | 31.2% | 20.4% | (many diffs) |
32 | human | 728841 | NBPF8 | NBPF member 8 | NM_001037501.3 | 31.2% | 20.6% | (many diffs) |
33 | human | 400818 | NBPF9 | NBPF member 9 | NM_001277444.1 | 26.5% | 17.4% | (many diffs) |
34 | human | 55672 | NBPF1 | NBPF member 1 | NM_017940.6 | 24.5% | 16.5% | (many diffs) |
35 | human | 149013 | NBPF12 | NBPF member 12 | XM_024453443.1 | 24.5% | 16.5% | (many diffs) |
36 | human | 101929780 | NBPF25P | NBPF member 25, pseudogene | NR_104217.1 | 23.3% | (many diffs) | |
37 | human | 84224 | NBPF3 | NBPF member 3 | NR_046176.3 | 22.6% | (many diffs) | |
38 | human | 101060684 | NBPF26 | NBPF member 26 | NM_001351372.1 | 22% | 14.8% | (many diffs) |
39 | human | 149013 | NBPF12 | NBPF member 12 | NM_001278141.1 | 19.9% | 13.5% | (many diffs) |
40 | human | 200030 | NBPF11 | NBPF member 11 | NR_110864.2 | 15.8% | (many diffs) | |
41 | human | 200030 | NBPF11 | NBPF member 11 | NR_046188.4 | 15.6% | (many diffs) | |
42 | human | 728841 | NBPF8 | NBPF member 8 | NR_102405.2 | 12.1% | (many diffs) | |
43 | human | 728841 | NBPF8 | NBPF member 8 | NR_102404.2 | 11.9% | (many diffs) | |
44 | human | 25832 | NBPF14 | NBPF member 14 | NM_015383.2 | 10.4% | 7% | (many diffs) |
45 | human | 100132406 | NBPF10 | NBPF member 10 | NM_001039703.6 | 8.1% | 5.4% | (many diffs) |
46 | human | 100132406 | NBPF10 | NBPF member 10 | NM_001302371.3 | 7.7% | 5.1% | (many diffs) |
47 | human | 101060226 | NBPF19 | NBPF member 19 | NM_001351365.1 | 6.5% | 4.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1080
- ORF length:
- 1014
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgcc actgactccc actgtccagg gcttccagtg gactctccga ggccctgatg 121 tagaaacttc cccattcggt gcaccaagag cagcctcaca tggtgtgggc cgacatcaag 181 agctgcgaga tccaacagtc cctggcccca cctcttctgc cacaaacgtc agcatggtgg 241 tatctgccgg cccttggtcc ggtgagaagg cagagatgaa cattctagaa atcaacaaga 301 aatcgcgccc ccagctggca gagaacaaac agcagttcag aaacctcaaa cagaaatgtc 361 ttgtaactca agtggcctac ttcctggcca accggcaaaa taattgcgac tatgaagact 421 gcaaagacct cataaaatct atgctgaggg atgagcggct gctcacagaa gagaagcttg 481 cagaggagct cgggcaagct gaggagctca ggcaatataa agtcctggtt cactctcagg 541 aacgagagct gacccagtta agggagaagt tacaggaagg gagagatgcc tcccgctcat 601 tgaatcagca tctccaggcc ctcctcactc cggatgagcc ggacaactcc cagggacggg 661 accTCCGAGA ACAGCTGGCT GAGGGATGTA GGCTGGCACA GCACCTCGTC CAAAAGCTCA 721 GCCCAGAAAA TGATGACGAT GAGGATGAAG ATGTTAAAGT TGAGGAGGCT GAGAAAGTAC 781 AGGAATTATA TGCCCCCAGG GAGGTGCAGA AGGCTGAAGA AAGGAAGTCC CTGAGGACTC 841 ACTGGAGGAG TATGCCATCA CTTGTTCAAA TAGCCACCAC CCTTGTGAGT CCAACCAGCC 901 TTACGGGAAC ACCAGAATCA CATTTGAGGA AGACCAAGTC GACTCAACTC TCATTGACTC 961 ATCCTCTCAT GATGAATGGT TGGATGCTGT ATGCATTATC CCAGAAAATG AAAGTGATCA 1021 TGAGCAAGAG GAAGAAAAAG GGCCAGTGTC TCCCAGATCA TCTGGAAGGT TTTGTTGTCT 1081 ACCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG 1141 GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC 1201 TTTATATATC TTGTGGAAAG GACGAATCAG CAGGTCACAC TGTTGAGTGA CGCGTTAAGT 1261 Cgacaatcaa cctctggatt acaaaatttg tgaaagatt