Construct: ORF TRCN0000466247

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015966.1_s317c1
Derived from:
ccsbBroadEn_12795
DNA Barcode:
ATCAGCAGGTCACACTGTTGAGTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NBPF3 (84224)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000466247
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 343505 NBPF7 NBPF member 7 XM_017001186.1 71.2% 49.7% (many diffs)
2 human 343505 NBPF7 NBPF member 7 NM_001047980.2 56.6% 38.7% (many diffs)
3 human 84224 NBPF3 NBPF member 3 XM_006710957.1 55.5% 40.8% (many diffs)
4 human 84224 NBPF3 NBPF member 3 NM_001256416.3 54.3% 39.2% (many diffs)
5 human 84224 NBPF3 NBPF member 3 NM_032264.5 52.3% 38.5% (many diffs)
6 human 102724250 LOC102724250 neuroblastoma breakpoint fa... XM_017030107.2 51.2% 32% (many diffs)
7 human 84224 NBPF3 NBPF member 3 XM_017002500.1 46.2% 32% (many diffs)
8 human 84224 NBPF3 NBPF member 3 XM_017002501.1 46.2% 32% (many diffs)
9 human 84224 NBPF3 NBPF member 3 XM_017002502.1 46.2% 32% (many diffs)
10 human 200030 NBPF11 NBPF member 11 XM_024453859.1 44.5% 29.8% (many diffs)
11 human 84224 NBPF3 NBPF member 3 NM_001330381.2 43.5% 30.2% (many diffs)
12 human 84224 NBPF3 NBPF member 3 XM_006710958.1 43.5% 30.2% (many diffs)
13 human 84224 NBPF3 NBPF member 3 XM_006710959.2 43.5% 30.2% (many diffs)
14 human 84224 NBPF3 NBPF member 3 XM_011542276.1 43.5% 30.2% (many diffs)
15 human 84224 NBPF3 NBPF member 3 XM_011542277.1 43.5% 30.2% (many diffs)
16 human 84224 NBPF3 NBPF member 3 XM_011542278.1 43.5% 30.2% (many diffs)
17 human 84224 NBPF3 NBPF member 3 XM_011542281.1 43.5% 30.2% (many diffs)
18 human 84224 NBPF3 NBPF member 3 XM_017002499.2 43.5% 30.2% (many diffs)
19 human 84224 NBPF3 NBPF member 3 XM_024450188.1 43.5% 30.2% (many diffs)
20 human 84224 NBPF3 NBPF member 3 XM_024450190.1 43.5% 30.2% (many diffs)
21 human 84224 NBPF3 NBPF member 3 NM_001256417.3 41.3% 28.3% (many diffs)
22 human 200030 NBPF11 NBPF member 11 XR_002959669.1 39.6% (many diffs)
23 human 200030 NBPF11 NBPF member 11 XR_002959662.1 39.5% (many diffs)
24 human 200030 NBPF11 NBPF member 11 XR_002959670.1 39% (many diffs)
25 human 284565 NBPF15 NBPF member 15 NM_001170755.2 34.7% 24.1% (many diffs)
26 human 284565 NBPF15 NBPF member 15 NM_173638.4 34.7% 24.1% (many diffs)
27 human 200030 NBPF11 NBPF member 11 XM_024453858.1 34.4% 23.1% (many diffs)
28 human 200030 NBPF11 NBPF member 11 NM_001101663.4 33.7% 22.7% (many diffs)
29 human 200030 NBPF11 NBPF member 11 NM_183372.6 31.7% 21.4% (many diffs)
30 human 102724250 LOC102724250 neuroblastoma breakpoint fa... XM_024452498.1 31.2% 20.7% (many diffs)
31 human 400818 NBPF9 NBPF member 9 NM_001037675.3 31.2% 20.4% (many diffs)
32 human 728841 NBPF8 NBPF member 8 NM_001037501.3 31.2% 20.6% (many diffs)
33 human 400818 NBPF9 NBPF member 9 NM_001277444.1 26.5% 17.4% (many diffs)
34 human 55672 NBPF1 NBPF member 1 NM_017940.6 24.5% 16.5% (many diffs)
35 human 149013 NBPF12 NBPF member 12 XM_024453443.1 24.5% 16.5% (many diffs)
36 human 101929780 NBPF25P NBPF member 25, pseudogene NR_104217.1 23.3% (many diffs)
37 human 84224 NBPF3 NBPF member 3 NR_046176.3 22.6% (many diffs)
38 human 101060684 NBPF26 NBPF member 26 NM_001351372.1 22% 14.8% (many diffs)
39 human 149013 NBPF12 NBPF member 12 NM_001278141.1 19.9% 13.5% (many diffs)
40 human 200030 NBPF11 NBPF member 11 NR_110864.2 15.8% (many diffs)
41 human 200030 NBPF11 NBPF member 11 NR_046188.4 15.6% (many diffs)
42 human 728841 NBPF8 NBPF member 8 NR_102405.2 12.1% (many diffs)
43 human 728841 NBPF8 NBPF member 8 NR_102404.2 11.9% (many diffs)
44 human 25832 NBPF14 NBPF member 14 NM_015383.2 10.4% 7% (many diffs)
45 human 100132406 NBPF10 NBPF member 10 NM_001039703.6 8.1% 5.4% (many diffs)
46 human 100132406 NBPF10 NBPF member 10 NM_001302371.3 7.7% 5.1% (many diffs)
47 human 101060226 NBPF19 NBPF member 19 NM_001351365.1 6.5% 4.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1080
ORF length:
1014
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcc actgactccc actgtccagg gcttccagtg gactctccga ggccctgatg
121tagaaacttc cccattcggt gcaccaagag cagcctcaca tggtgtgggc cgacatcaag
181agctgcgaga tccaacagtc cctggcccca cctcttctgc cacaaacgtc agcatggtgg
241tatctgccgg cccttggtcc ggtgagaagg cagagatgaa cattctagaa atcaacaaga
301aatcgcgccc ccagctggca gagaacaaac agcagttcag aaacctcaaa cagaaatgtc
361ttgtaactca agtggcctac ttcctggcca accggcaaaa taattgcgac tatgaagact
421gcaaagacct cataaaatct atgctgaggg atgagcggct gctcacagaa gagaagcttg
481cagaggagct cgggcaagct gaggagctca ggcaatataa agtcctggtt cactctcagg
541aacgagagct gacccagtta agggagaagt tacaggaagg gagagatgcc tcccgctcat
601tgaatcagca tctccaggcc ctcctcactc cggatgagcc ggacaactcc cagggacggg
661accTCCGAGA ACAGCTGGCT GAGGGATGTA GGCTGGCACA GCACCTCGTC CAAAAGCTCA
721GCCCAGAAAA TGATGACGAT GAGGATGAAG ATGTTAAAGT TGAGGAGGCT GAGAAAGTAC
781AGGAATTATA TGCCCCCAGG GAGGTGCAGA AGGCTGAAGA AAGGAAGTCC CTGAGGACTC
841ACTGGAGGAG TATGCCATCA CTTGTTCAAA TAGCCACCAC CCTTGTGAGT CCAACCAGCC
901TTACGGGAAC ACCAGAATCA CATTTGAGGA AGACCAAGTC GACTCAACTC TCATTGACTC
961ATCCTCTCAT GATGAATGGT TGGATGCTGT ATGCATTATC CCAGAAAATG AAAGTGATCA
1021TGAGCAAGAG GAAGAAAAAG GGCCAGTGTC TCCCAGATCA TCTGGAAGGT TTTGTTGTCT
1081ACCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
1141GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
1201TTTATATATC TTGTGGAAAG GACGAATCAG CAGGTCACAC TGTTGAGTGA CGCGTTAAGT
1261Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)