Construct: ORF TRCN0000467491

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015444.1_s317c1
Derived from:
ccsbBroadEn_13719
DNA Barcode:
ATCAGATGCCTACGAAGGCAGTTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LOC642204 (642204)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467491
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 441425 ANKRD20A3 ankyrin repeat domain 20 fa... XM_011543861.3 29.6% 17% (many diffs)
2 human 441430 ANKRD20A2 ankyrin repeat domain 20 fa... XM_011517879.2 29.5% 17% (many diffs)
3 human 441425 ANKRD20A3 ankyrin repeat domain 20 fa... XM_005272525.4 16.1% 9.4% (many diffs)
4 human 441425 ANKRD20A3 ankyrin repeat domain 20 fa... NM_001012419.2 16% 9.4% (many diffs)
5 human 84210 ANKRD20A1 ankyrin repeat domain 20 fa... NM_032250.3 16% 9.4% (many diffs)
6 human 441430 ANKRD20A2 ankyrin repeat domain 20 fa... XM_024447553.1 16% 9.4% (many diffs)
7 human 441430 ANKRD20A2 ankyrin repeat domain 20 fa... NM_001012421.1 16% 9.4% (many diffs)
8 human 728747 ANKRD20A4 ankyrin repeat domain 20 fa... NM_001098805.1 16% 9.2% (many diffs)
9 human 441425 ANKRD20A3 ankyrin repeat domain 20 fa... XM_011543860.3 15.8% 9.2% (many diffs)
10 human 441430 ANKRD20A2 ankyrin repeat domain 20 fa... XM_011517878.2 15.8% 9.2% (many diffs)
11 human 441430 ANKRD20A2 ankyrin repeat domain 20 fa... XM_011517877.3 15.7% 9.2% (many diffs)
12 human 102723552 ANKRD20A21P ankyrin repeat domain 20 fa... XR_002958558.1 13.5% (many diffs)
13 human 440482 ANKRD20A5P ankyrin repeat domain 20 fa... NR_040113.1 10.4% (many diffs)
14 human 110006327 ANKRD20A4-ANKRD20A20P ANKRD20A4-ANKRD20A20P readt... NR_146419.1 9% (many diffs)
15 human 441425 ANKRD20A3 ankyrin repeat domain 20 fa... XR_001746296.2 8.5% (many diffs)
16 human 441425 ANKRD20A3 ankyrin repeat domain 20 fa... XR_001746295.2 8.4% (many diffs)
17 human 729171 ANKRD20A8P ankyrin repeat domain 20 fa... NR_003366.2 8% (many diffs)
18 human 400110 ANKRD20A19P ankyrin repeat domain 20 fa... NR_073430.1 6.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
495
ORF length:
426
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gaagttattt gccTTCGGGA GCCGCAGGGG CCAGACGGCC CAGGGCTCTA
121TAGAACATGT CTACACGGGT TCCGGATACC GAATCCGGGA CTCCGAACTG CAGAAGATCC
181ACAGGGCAGC TGTCAAGGGC GACGCCGCGG GGGTGGAGCG CTGCCTGGCG CGCAGGAGCG
241GAGACCTGGA CGCCCTGGAC AAGCAGCACA GGCTGTCCAT TGCCAGGAAG AGGCTTGCGC
301CGTTATTCTG CTGGAACATG GCACCAATCC AAACCTTAAG GATATCTACC GCAACACTGC
361TCTCCAGTAT GCTGTGTATA GTGAGAGCAC CTCACTGGCA GAAAAACTGC TTTTCCATGG
421TGCAAATATT GAAGCACTGG ACAAGGTATA GATCAATCAA CTTTCTTTCC AAAATATTTG
481TTTTAACATT GACATTGCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
541CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
601TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA ATCAGATGCC TACGAAGGCA
661GTTCACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)