Construct: ORF TRCN0000467892

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004448.1_s317c1
Derived from:
ccsbBroadEn_00095
DNA Barcode:
AAGACCTTCCAAGGGGGGATCTAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARF3 (377)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467892
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 377 ARF3 ADP ribosylation factor 3 NM_001659.3 99.8% 100% 117C>G
2 human 377 ARF3 ADP ribosylation factor 3 XM_005268856.1 99.8% 100% 117C>G
3 human 377 ARF3 ADP ribosylation factor 3 XM_024448972.1 99.8% 100% 117C>G
4 human 375 ARF1 ADP ribosylation factor 1 NM_001024226.1 83.9% 96.1% (many diffs)
5 human 375 ARF1 ADP ribosylation factor 1 NM_001024227.1 83.9% 96.1% (many diffs)
6 human 375 ARF1 ADP ribosylation factor 1 NM_001024228.2 83.9% 96.1% (many diffs)
7 human 375 ARF1 ADP ribosylation factor 1 NM_001658.4 83.9% 96.1% (many diffs)
8 human 377 ARF3 ADP ribosylation factor 3 XM_006719391.4 74.2% 70.7% (many diffs)
9 mouse 11842 Arf3 ADP-ribosylation factor 3 NM_007478.3 92.8% 100% (many diffs)
10 mouse 11842 Arf3 ADP-ribosylation factor 3 XM_011245445.1 92.8% 100% (many diffs)
11 mouse 11840 Arf1 ADP-ribosylation factor 1 NM_001130408.1 82.8% 96.1% (many diffs)
12 mouse 11840 Arf1 ADP-ribosylation factor 1 NM_007476.3 82.8% 96.1% (many diffs)
13 mouse 11841 Arf2 ADP-ribosylation factor 2 NM_001304574.1 81.3% 94.4% (many diffs)
14 mouse 11841 Arf2 ADP-ribosylation factor 2 NM_007477.5 81.3% 94.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
609
ORF length:
543
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg caatatcttt ggaaaccttc tcaagagcct gattgggaag aaggagatgc
121gcatcctgat ggtgggccTG GATGCCGCAG GAAAGACCAC CATCCTATAC AAGCTGAAAC
181TGGGGGAGAT CGTCACCACC ATCCCTACCA TTGGGTTCAA TGTGGAGACA GTGGAGTATA
241AGAACATCAG CTTTACAGTG TGGGATGTGG GTGGCCAGGA CAAGATTCGA CCCCTCTGGA
301GACACTACTT CCAGAACACC CAAGGGTTGA TATTTGTGGT CGACAGCAAT GATCGGGAGC
361GAGTAAATGA GGCCCGGGAA GAGCTGATGA GAATGCTGGC GGAGGACGAG CTCCGGGATG
421CTGTACTCCT TGTCTTTGCA AACAAACAGG ATCTGCCTAA TGCTATGAAC GCTGCTGAGA
481TCACAGACAA GCTGGGCCTG CATTCCCTTC GTCACCGTAA CTGGTACATT CAGGCCACCT
541GTGCCACCAG CGGGGACGGG CTGTACGAAG GCCTGGACTG GCTGGCCAAT CAGCTCAAAA
601ACAAGAAGTG CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
661CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
721TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAAAGACC TTCCAAGGGG GGATCTAGAC
781GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)