Construct: ORF TRCN0000468075

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001607.1_s317c1
Derived from:
ccsbBroadEn_09255
DNA Barcode:
ATACTCGCAATGAAACTCCGACGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BAGE3 (85318)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468075
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 85319 BAGE2 BAGE family member 2 NM_182482.2 99.6% 99% 214C>G
2 human 85318 BAGE3 BAGE family member 3 NM_182481.1 99% 98.1% 214C>G;309A>G;317A>G
3 human 574 BAGE B melanoma antigen NM_001187.1 36.3% 34.8% (many diffs)
4 human 85316 BAGE5 BAGE family member 5 NM_182484.2 36% 35.7% (many diffs)
5 human 85317 BAGE4 BAGE family member 4 NM_181704.1 33.9% 33.9% (many diffs)
6 human 58508 KMT2C lysine methyltransferase 2C XR_428183.3 2.3% (many diffs)
7 human 58508 KMT2C lysine methyltransferase 2C XM_011516453.2 1.9% .4% (many diffs)
8 human 58508 KMT2C lysine methyltransferase 2C NM_170606.3 1.9% .4% (many diffs)
9 human 58508 KMT2C lysine methyltransferase 2C XM_017012488.1 1.9% .4% (many diffs)
10 human 58508 KMT2C lysine methyltransferase 2C XM_006716079.3 1.9% .4% (many diffs)
11 human 58508 KMT2C lysine methyltransferase 2C XM_005250031.4 1.9% .4% (many diffs)
12 human 58508 KMT2C lysine methyltransferase 2C XM_011516452.2 1.9% .4% (many diffs)
13 human 58508 KMT2C lysine methyltransferase 2C XM_017012487.1 1.9% .4% (many diffs)
14 human 58508 KMT2C lysine methyltransferase 2C XM_011516451.2 1.9% .4% (many diffs)
15 human 58508 KMT2C lysine methyltransferase 2C XM_017012486.1 1.9% .4% (many diffs)
16 human 58508 KMT2C lysine methyltransferase 2C XM_024446853.1 1.9% .4% (many diffs)
17 human 58508 KMT2C lysine methyltransferase 2C XM_006716078.3 1.9% .4% (many diffs)
18 human 58508 KMT2C lysine methyltransferase 2C XM_011516456.2 1.9% .4% (many diffs)
19 human 58508 KMT2C lysine methyltransferase 2C XM_017012485.1 1.9% .4% (many diffs)
20 human 58508 KMT2C lysine methyltransferase 2C XM_011516450.2 1.9% .4% (many diffs)
21 human 58508 KMT2C lysine methyltransferase 2C XM_017012484.1 1.9% .4% (many diffs)
22 human 58508 KMT2C lysine methyltransferase 2C XM_017012482.1 1.9% .4% (many diffs)
23 human 58508 KMT2C lysine methyltransferase 2C XM_017012483.1 1.9% .4% (many diffs)
24 human 58508 KMT2C lysine methyltransferase 2C XM_005250028.4 1.9% .4% (many diffs)
25 human 58508 KMT2C lysine methyltransferase 2C XM_024446852.1 1.9% .5% (many diffs)
26 human 58508 KMT2C lysine methyltransferase 2C XM_005250026.3 1.9% .4% (many diffs)
27 human 58508 KMT2C lysine methyltransferase 2C XM_005250027.4 1.9% .4% (many diffs)
28 human 58508 KMT2C lysine methyltransferase 2C XM_006716077.3 1.9% .4% (many diffs)
29 human 58508 KMT2C lysine methyltransferase 2C XM_017012481.1 1.9% .4% (many diffs)
30 human 58508 KMT2C lysine methyltransferase 2C XM_005250025.4 1.9% .4% (many diffs)
31 human 58508 KMT2C lysine methyltransferase 2C XM_017012480.1 1.9% .4% (many diffs)
32 human 58508 KMT2C lysine methyltransferase 2C XM_011516454.2 1% .5% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
396
ORF length:
327
Sequence:
1TCTTCCATTT CAGGTGTCGT GAGGCTAGCA TCGATTGATC AACAAGTTTG TACAAAAAAG
61TTGGCACCAT GGCGGCTGGA GTGGTTTTTC TGGCATTGTC TGCCCAGCTG CTCCAAGCCA
121GGCTGATGAA GGAGGAGTCC CCTGTGGTGA GCTGGAGGTT GGAGCCTGAA GATGGCACAG
181CTCTCGATGT GCATTTTGTA AGCACTTTGG AGCCACTATC AAATGCTGTG AAGAGAAATG
241TACCCAGATG TATCATTATC CTTGTGCTGC AGGAGCCGAC AGCTTTCAGG ATTTCAGTCA
301CATCTTCCTG CTTTGTCCAG AACACATTGA CCAAGCTCCT GAAAGATCGA AGGAAGATGC
361AAACTGTGCA GTGTGCGACA GCCCGGGAGA CCTCTTTGCC AACTTTCTTG TACAAAGTGG
421TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
481CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
541AATACTCGCA ATGAAACTCC GACGAACGCG TTAAGTCgac aatcaacctc tggattacaa
601aatttgtgaa agatt

Download FASTA (ORF) (Full)