Construct: ORF TRCN0000468585

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015697.1_s317c1
Derived from:
ccsbBroadEn_12581
DNA Barcode:
TCAACCTCTCCTATCTTCTGCACC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MCPH1 (79648)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468585
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79648 MCPH1 microcephalin 1 NM_001322045.1 89.2% 89% (many diffs)
2 human 79648 MCPH1 microcephalin 1 NM_001322043.1 84.5% 84.3% (many diffs)
3 human 79648 MCPH1 microcephalin 1 NM_001172574.1 84.2% 84% (many diffs)
4 human 79648 MCPH1 microcephalin 1 NM_001172575.1 76.3% 76% (many diffs)
5 human 79648 MCPH1 microcephalin 1 NM_001363980.2 69.1% 68.8% (many diffs)
6 human 79648 MCPH1 microcephalin 1 XM_011534759.3 68.9% 68.6% (many diffs)
7 human 79648 MCPH1 microcephalin 1 XM_011534758.3 68.2% 67.9% (many diffs)
8 human 79648 MCPH1 microcephalin 1 XM_017013833.2 67.1% 66.8% (many diffs)
9 human 79648 MCPH1 microcephalin 1 XM_011534757.3 67% 66.7% (many diffs)
10 human 79648 MCPH1 microcephalin 1 XM_011534756.3 66.1% 65.8% (many diffs)
11 human 79648 MCPH1 microcephalin 1 XM_017013832.2 65.9% 65.6% (many diffs)
12 human 79648 MCPH1 microcephalin 1 XM_017013831.2 63.8% 63.5% (many diffs)
13 human 79648 MCPH1 microcephalin 1 NM_001363979.1 61.8% 61.5% (many diffs)
14 human 79648 MCPH1 microcephalin 1 NM_024596.5 61.4% 61.1% (many diffs)
15 human 79648 MCPH1 microcephalin 1 XM_011534755.3 58.8% 58.6% (many diffs)
16 human 79648 MCPH1 microcephalin 1 NM_001322042.2 58.6% 58.4% (many diffs)
17 human 79648 MCPH1 microcephalin 1 XM_017013829.2 58.4% 58.2% (many diffs)
18 human 79648 MCPH1 microcephalin 1 XM_011534760.2 55.8% 55.6% (many diffs)
19 human 79648 MCPH1 microcephalin 1 NR_136159.1 40.8% (many diffs)
20 human 79648 MCPH1 microcephalin 1 XR_001745596.2 29% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1611
ORF length:
1545
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa tgaacactta tcaagcctaa ttaaaaaaaa acgtaaatgt atgcagccca
121aggattttaa ttttaaaaca ccagaaaatg ataagagatt tcagaagaaa tttgagaaaa
181tggctaaaga gctacaaagg caaaaaacaa atctagatga tgatgtacct attctcttat
241ttgaatctaa tggttcatta atatatactc ccacaattga aattaatagt agtcaccaca
301gcgcaatgga gaagagatta caagagatga aggagaaaag ggaaaatctt tcccccacct
361cttcccaaat gattcagcag tctcatgata atccaagtaa ctctctgtgt gaagcacctt
421tgaacatttc acgtgatact ttgtgttcag atgaatactt tgctggtggc ttacactcat
481cttttgatga tctttgtgga aactcaggat gtggaaatca ggaaaggaag ttggaaggat
541ccattaatga cattaaaagt gatgtgtgta tttcttcact tgtattgaaa gcaaataata
601ttcattcatc accatctttc actcacctcg ataaatcaag tcctcagaaa tttctgagta
661atctttcaaa ggaagaaata aacttgcaaa gaaatattgc aggtaaagta gtcacccctc
721accaaaagca ggctgcaggt atgtctcagg agacgtttga agagaagtat cgtttgtctc
781ctaccttatc ttcaacaaaa ggccaccttt tgatacattc aagacccagg agttcctcag
841taaagagaaa aagagtatca catggctccc attcacctcc gaaggaaaaa tgcaagagaa
901agaggagcac caggagatct atcatgccga ggctgcagct gtgcaggtcg gaaggcaggc
961tgcagcacgt ggcgggacct gccctggagg ctcttagctg tggggagtct tcatatgatg
1021actatttttc acctgataat cttaaggaaa ggtattcaga gaatcttcct cctgaatctc
1081agctgccatc aagccctgct cagttgagct gcagaagtct ttctaagaag gagagaacaa
1141gcatatttga aatgtctgat ttttcctgcg ttggcaaaaa aaccagaaca gttgacatta
1201ccaatttcac agcaaaaacc atctccagtc ctcggaaaac tggaaatggt gaaggccgtg
1261caacttcgag ttgcgtgact tctgcccctg aagaagcccT AAGGTGTTGT AGACAGGCTG
1321GGAAAGAAGA CGCATGCCCA GAGGGAAATG GCTTTTCTTA CACCATTGAG GACCCTGCTC
1381TTCCAAAAGG ACATGATGAT GATTTAACTC CTTTGGAAGG AAGCCTTGAA GAAATGAAAG
1441AAGCGGTTGG TCTGAAAAGC ACACAGAACA AAGGTACCAC TTCCAAAATA TCAAACTCCT
1501CTGAAGGCGA AGCCCAGAGT GAACATGAGC CATGTTTTAT AGTTGACTGT AACATGGAGA
1561CGTCTACAGA AGAGAAGGAA AACTTACCCG GAGGATACAG TGGAAGTATG TGCCCAACTT
1621TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
1681CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
1741CTTGTGGAAA GGACGATCAA CCTCTCCTAT CTTCTGCACC ACGCGTTAAG TCgacaatca
1801acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)