Construct: ORF TRCN0000469829

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000999.1_s317c1
Derived from:
ccsbBroadEn_12742
DNA Barcode:
GACATGATCCGTATTAACAAGGGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
COG3 (83548)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469829
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83548 COG3 component of oligomeric gol... XM_011535267.3 73.2% 73.1% (many diffs)
2 human 83548 COG3 component of oligomeric gol... NM_031431.4 53.4% 53.3% (many diffs)
3 human 83548 COG3 component of oligomeric gol... XR_001749695.2 31% (many diffs)
4 human 83548 COG3 component of oligomeric gol... XR_001749696.2 30.6% (many diffs)
5 human 83548 COG3 component of oligomeric gol... XR_429222.4 28.9% (many diffs)
6 human 83548 COG3 component of oligomeric gol... XM_011535266.2 26.4% 26.3% (many diffs)
7 mouse 338337 Cog3 component of oligomeric gol... XM_006519148.3 50% 52.8% (many diffs)
8 mouse 338337 Cog3 component of oligomeric gol... NM_177381.3 48% 50.8% (many diffs)
9 mouse 338337 Cog3 component of oligomeric gol... XM_011245092.1 23.7% 25.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1398
ORF length:
1332
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ggaggcggcg ctgttgctgc tgcctgaggc ggcggcggag cgggacgcta
121gggaaaagct ggctctctgg gatcggagac cggacacgac ggcgccgctg accgacaggc
181agacggactc ggtattggag ctgaaggcgg cggcagagaa cttgccggtg ccagctgagc
241ttccaattga agacttgtgc agtttaacat cccagtcact gcccattgaa ctgacttcag
301tagtgcctga atctacagaa gacattctct tgaagggctt cacttcctta ggaatggaag
361aagaaagaat tgaaaccgca cagcagtttt tctcatggtt tgcaaagctg caaactcaga
421tggatcaaga tgaaggaact aaatatagac agatgaggga ttacttgtct gggtttcagg
481agcagtgtga tgctatattg aatgatgtaa acagtgctct tcagcatctg gagtctttgc
541agaaacagta tctttttgtg tccaataaga caggaaccct acatgaagcc tgtgaacagc
601tcctaaaaga acagtcggaa cttgttgatc tggctgaaaa cattcaacaa aagctttcct
661attttaacga attggaaact attaacacaa aattgaattc ccctacattg tcggtgaata
721gtgacggatt tatacctatg ctggccaagt tagatgattg tataacatat atctcatctc
781atcctaattt taaagattat cccatatatt tgctgaagtt taaacagtgt ctttctaaag
841ctttgcacct catgaagaca tatactgtga acacactaca gaccctcaca agtcagttac
901tgaaaaggga tccttcatct gtaccTAATG CAGACAATGC CTTCACATTA TTTTATGTGA
961AATTTCGAGC TGCTGCCCCC AAAGTCAGAA CTCTTATTGA ACAAATAGAA CTGCGGTCTG
1021AAAAAATACC TGAATACCAA CAACTGCTAA ATGATATCCA CCAGTGTTAC CTTGATCAGC
1081GGGAGCTCCT TTTGGGCCCT AGTATTGCTT GCACTGTTGC AGAGTTAACC AGCCAAAATA
1141ATAGAGATCA CTGTGCCTTG GTTCGTAGTG GCTGTGCCTT CATGGTTCAT GTCTGCCAGG
1201ATGAACACCA ACTTTACAAT GAATTTTTCA CAAAACCAAC ATCAAAATTA GATGAGCTTT
1261TGGAGAAACT GTGTGTGTCA TTGTATGATG TCTTCAGGCC ATTGATCATT CATGTTATTC
1321ACTTAGAGAC TCTGTCGGAA CTTTGTGGGA TTCTTAAAAA TGAAGTGCTT GAAGATCATG
1381TGCAGAACAA TGGTAAATGC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
1441TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
1501GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGAGACATGA TCCGTATTAA
1561CAAGGGAACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)