Construct: ORF TRCN0000470046

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006571.1_s317c1
Derived from:
ccsbBroadEn_12139
DNA Barcode:
AGTGATCTGCATAGGTAATGGCGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PHIP (55023)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470046
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55023 PHIP pleckstrin homology domain ... XM_017010989.2 55.7% 55.8% 1_1677del;2563C>T;2571T>A
2 human 55023 PHIP pleckstrin homology domain ... XM_017010990.2 55.7% 55.8% 1_1677del;2563C>T;2571T>A
3 human 55023 PHIP pleckstrin homology domain ... XM_011535918.3 42.8% 42.8% 1_2826del;3712C>T;3720T>A
4 human 55023 PHIP pleckstrin homology domain ... XM_005248729.5 38.8% 38.8% 1_3339del;4225C>T;4233T>A
5 human 55023 PHIP pleckstrin homology domain ... NM_017934.7 38.7% 38.8% 1_3342del;4228C>T;4236T>A
6 mouse 83946 Phip pleckstrin homology domain ... XM_011242840.2 49.2% 50.8% (many diffs)
7 mouse 83946 Phip pleckstrin homology domain ... XM_006511565.3 37.8% 39% (many diffs)
8 mouse 83946 Phip pleckstrin homology domain ... XM_006511564.3 34.2% 35.3% (many diffs)
9 mouse 83946 Phip pleckstrin homology domain ... NM_001081216.1 34.2% 35.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2187
ORF length:
2121
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag tccttgggat atggagctta tacctaataa tgctgtattt cctgaagaac
121taggtaccag tgttccttta actgatggtg agtgcagatc actaatctat aaacctcttg
181atggagaatg gggtaccaat cccagggatg aagaatgtga aagaattgtg gcaggaataa
241accagttgat gacactagat attgcctcag catttgtggc ccccgtggat ctgcaagcct
301atcccatgta ttgcacagta gtggcatatc caacggatct aagtacaatt aaacaaagac
361tggaaaacag gttttacagg cgggtttctt ccctaatgtg ggaagttcga tatatagagc
421ataatacacg aacatttaat gagcctggaa gccctattgt gaaatctgct aaattcgtga
481ctgatcttct tctacatttt ataaaggatc agacttgtta taacataatt ccactttata
541attcaatgaa gaagaaagtt ttgtctgatt ctgaggatga agagaaagat gctgatgtgc
601caggaacttc tactcgaaaa aggaaggacc atcagcctag aagaagatta cgtaatagag
661cccagtctta cgatattcaa gcatggaaga aacagtgtga agaattgtta aatctcatat
721ttcaatgtga agattcagag cctttccgtc agccggtaga tctccttgaa tatccagact
781acagagacat cattgacact ccaatggatt ttgctaccgt tagagaaact ttagaggctg
841ggaattatga gtcaccaatg gagttatgta aagatgtcag acttattttc agtaattcca
901aagcatatac accaagcaaa agatcaagga tttacagcat gagtttgcgc ttgtctgcat
961tctttgaaga acacattagt tcagttttat cagattataa atctgctctt cgttttcata
1021aaagaaatac cataaccaaa aggaggaaga aaagaaacag aagcagctct gtttccagta
1081gtgctgcatc aagccctgaa aggaaaaaaa ggatcttaaa accccagcta aaatcagaaa
1141gctctacctc tgcattctct acacctacac gatcaatacc gccaagacac aatgctgctc
1201agataaacgg taaaacagaa tctagttctg tggttcgaac cagaagcaac cgagtggttg
1261tagatccagt tgtcactgag caaccatcta cttcttcagc tgcaaagact tttattacaa
1321aagctaatgc atctgcaata ccagggaaaa caatactaga gaattctgtg aaacattcca
1381aagctttgaa tactctttcc agtcctggtc aatccagttt tagtcatggc actaggaata
1441attctgcaaa agaaaacatg gaaaaggaaa agccagtcaa acgtaaaatg aagtcatctg
1501tactcccaaa ggcgtccact ctttcaaagt catcagctgt cattgagcaa ggagattgta
1561agaacaacgc tcttgtacca ggaaccattc aagtaaatgg ccatggagga cagccatcaa
1621aacttgtgaa gaggggacct ggaaggaaac ctaaagtaga agttaatacc aatagtggtg
1681aaattataca caagaaaagg ggtagaaagc ccaaaaagct acagtatgca aagccagaag
1741atttagagca aaataatgtg caTCCCATCA GAGATGAAGT ACTTCCTTCT TCAACATGCA
1801ATTTTCTTTC TGAAACTAAT AATGTAAAGG AAGATTTGTT ACAGAAAAAG AATCGTGGAG
1861GTAGGAAGCC CAAAAGGAAG ATGAAGACAC AAAAATTAGA TGCAGATCTC CTAGTCCCTG
1921CAAGTGTCAA AGTGTTAAGG AGAAGTAACC GAAAAAAGAT AGATGATCCT ATAGATGAGG
1981AAGAAGAGTT TGAAGAACTC AAAGGCTCTG AACCCCACAT GAGAACTAGA AATCAAGGTC
2041GAAGGACAGC TTTCTATAAT GAGGATGACT CTGAAGAGGA GCAAAGGCAG CTGTTGTTCG
2101AAGACACCTC TTTAACTTTT GGAACTTCTA GTAGAGGACG AGTCCGAAAG TTGACTGAAA
2161AAGCAAAAGC TAATTTAATT GGTTGGTACC CAACTTTCTT GTACAAAGTG GTTGATATCG
2221GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
2281AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAAGTGATCT
2341GCATAGGTAA TGGCGCACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
2401aagatt

Download FASTA (ORF) (Full)