Construct: ORF TRCN0000471401

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009055.1_s317c1
Derived from:
ccsbBroadEn_13068
DNA Barcode:
CTCGCCAAACAATTCTACCCGCGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
C10orf71 (118461)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471401
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 118461 C10orf71 chromosome 10 open reading ... NM_001135196.2 49.2% 47.9% (many diffs)
2 human 118461 C10orf71 chromosome 10 open reading ... XM_005269476.4 49.2% 47.9% (many diffs)
3 human 118461 C10orf71 chromosome 10 open reading ... XM_005269477.3 49.2% 47.9% (many diffs)
4 human 118461 C10orf71 chromosome 10 open reading ... XM_005269478.4 49.2% 47.9% (many diffs)
5 human 118461 C10orf71 chromosome 10 open reading ... XM_017015619.1 38.8% 37.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2202
ORF length:
2133
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gatgcaagga aataagaagt gcacagacgc gttcagcgac tcctccagca
121tcggcagcgt gttggatgat gcagacaggg aggtgagcag cctaacagac cgggcattcc
181ggagtttgtg catctccgag gacacatcct tccatgactc ctatctggct gtgtccccgg
241atatcacccg acaggtgttt gggacttttc accagagaac agtgggccac acccagagga
301aaagtggcat ttggagccag ttaccgtcac agggcacgga acattcgggc tgggcggcca
361ccttccaaca gctacccaag tacgttcagg gagaggaaaa gtaccccaaa accagccccc
421caccaacgcc agtccagagg agactggagg tgccagtttc cggcctaagg agcagcaata
481agcctgtctc caaagtatca acactaatta aatctttcga caggaccgag agccaacgtt
541gtgagagcag gcccactgcc agcaagcctc cggctctgaa aaatcctccc aaattcgctc
601ctcttccaga aaacagtgtc aacttctgct tcgattctgc ctttctgaca gtcaggaggg
661tgcccgctga agtttccaac acccatcaga acagctacca gccaggcagg aagcacggag
721aacaggagtc ctccaagaat ccagaaatgg cctgtcacgg ctccagcagc ttcctcccag
781cagccaatga cacggccacc ttatgtgagt caaagttccc ctctccacac cacaagccag
841tcacgggtga gcctgggaga ggcaaaggta cctttctgca cagtgaaaat agtgcttttg
901agtcatggaa tgcccaccaa ccaaagctgc tggagagaaa ggacacagct ggaaccgtcc
961cagaaagcaa agctcccaag cactatgggg acacgacctt gctaagagaa ccctgtcctc
1021ctgagctcac agtctctccc tgccaggtcc aggccagctg cagtcaggaa gagaacagac
1081tcgaagcagg ggctctgtcc acatctatac cctgggggtg cagggatcca ggagcccagg
1141tatttgctgt ggaaggaaaa gctcccagct cacaacctga ttctcaagag aagccagccc
1201agcccccatg gaggaagcca aagactggca aaaaagggaa agaaagtcta caagatactt
1261tagaagaaaa gacacagacc aaccagagag gcccaccttt gtatacaaaa cacaaccccc
1321aggaacagtt ttcagaaaac aatgctcttg acctgcctgt ggaacccaat gaacattatg
1381atcccccctt taacatcagt aagctcctga cccccatcat acccagcaag cacgccctgg
1441attcagcagc cagccagcca gcagagcgaa ccccatcacc cccaggacag ctaaacggat
1501accaagagaa ggagcccagt gaatgtcagt ctcgagacag ctacaagtcc aaagccccta
1561gcctgctgtt caacctcaag gacgtgcgga agcgtgttaa gagcacatac agttcctcac
1621ctctcttgaa agtgcttgat gagaaaacta gaggtaaggt tgatggaaag caagaacctg
1681tgagcaacgg tgtcatcctc cccaatgggc ttgaggaaag ccctccaaat gagctttcta
1741aggagagacc cgctgatgac cccactgcat cacacatcaa tccccagaag gaccctacag
1801ctgaccccag tgagccctct gcagacagct atctaactct tagcacagct ccgactatcg
1861ccaaagcccc cttctatgtc aatggggagg ctgctgagag aagcagttat gagaacaagg
1921aggtggaagg agagttGGAG ATGGGTCCTG CCGGATCCAG CTGGTGTCCA GACTCCAGGG
1981AACACCGCCC CAGGAAACAC CTCTCCCTGA GGCTTTGCAA TAGGGATCCT GAGCCTGGAG
2041GGGCTACAGA GAAAATGAAG ACCCACCAGC TAGAGAATGG GCTCTCCAGA TCTGTGTCCC
2101AAGAGACAGA ACCTGAGAGG GAAGCAGGAC TTCAGAACAC ACACACACAC GATCATCAAC
2161ACATACTTAG CCTTTTTAGA TCCATAAAGT CCAGAAGGCA GTTGCCAACT TTCTTGTACA
2221AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
2281AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA
2341AGGACGACTC GCCAAACAAT TCTACCCGCG GACGCGTTAA GTCgacaatc aacctctgga
2401ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)