Construct: ORF TRCN0000472162
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004033.1_s317c1
- Derived from:
- ccsbBroadEn_07762
- DNA Barcode:
- TCCCTGTATGCGACTCTTCCCAAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LDB3 (11155)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000472162
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11155 | LDB3 | LIM domain binding 3 | NM_001080116.1 | 99.8% | 100% | 588T>C |
| 2 | human | 11155 | LDB3 | LIM domain binding 3 | NM_001368067.1 | 99.8% | 100% | 588T>C |
| 3 | human | 11155 | LDB3 | LIM domain binding 3 | NM_001368068.1 | 99.8% | 100% | 588T>C |
| 4 | human | 11155 | LDB3 | LIM domain binding 3 | NM_001080115.2 | 76.9% | 69.7% | (many diffs) |
| 5 | human | 11155 | LDB3 | LIM domain binding 3 | NM_001368063.1 | 76.9% | 69.7% | (many diffs) |
| 6 | human | 11155 | LDB3 | LIM domain binding 3 | NM_001171611.2 | 70.7% | 69.8% | (many diffs) |
| 7 | human | 11155 | LDB3 | LIM domain binding 3 | NM_001080114.2 | 43.8% | 41.6% | (many diffs) |
| 8 | human | 11155 | LDB3 | LIM domain binding 3 | NM_001368066.1 | 39.6% | 37.3% | (many diffs) |
| 9 | human | 11155 | LDB3 | LIM domain binding 3 | NM_001368064.1 | 36.9% | 30.8% | (many diffs) |
| 10 | human | 11155 | LDB3 | LIM domain binding 3 | NM_001368065.1 | 36.9% | 30.8% | (many diffs) |
| 11 | human | 11155 | LDB3 | LIM domain binding 3 | NM_001171610.2 | 36.8% | 34.4% | (many diffs) |
| 12 | human | 11155 | LDB3 | LIM domain binding 3 | NM_007078.3 | 33.6% | 27.8% | (many diffs) |
| 13 | mouse | 24131 | Ldb3 | LIM domain binding 3 | XM_006519019.3 | 91.6% | 97.1% | (many diffs) |
| 14 | mouse | 24131 | Ldb3 | LIM domain binding 3 | NM_001039075.2 | 90% | 95.4% | (many diffs) |
| 15 | mouse | 24131 | Ldb3 | LIM domain binding 3 | NM_001039076.2 | 73.8% | 68.8% | (many diffs) |
| 16 | mouse | 24131 | Ldb3 | LIM domain binding 3 | XM_006519018.3 | 40.2% | 40.3% | (many diffs) |
| 17 | mouse | 24131 | Ldb3 | LIM domain binding 3 | NM_001039073.2 | 39.9% | 40% | (many diffs) |
| 18 | mouse | 24131 | Ldb3 | LIM domain binding 3 | NM_001039072.2 | 36.5% | 36.3% | (many diffs) |
| 19 | mouse | 24131 | Ldb3 | LIM domain binding 3 | NM_001039074.2 | 36.3% | 36.1% | (many diffs) |
| 20 | mouse | 24131 | Ldb3 | LIM domain binding 3 | XM_006519017.3 | 36.3% | 36.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 915
- ORF length:
- 849
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ntggcatgtc ttacagtgtg accctgactg ggcccgggcc ctggggcttc cgtctgcagg 121 ggggcaagga cttcaacatg cccctcacta tctcccggat cacaccaggc agcaaggcag 181 cccagtccca gctcagccag ggtgacctcg tggtggccat tgacggcgtc aacacagaca 241 ccatgaccca cctggaagcc cagaacaaga tcaagtctgc cagctacaac ttgagcctca 301 ccctgcagaa atcaaagcgt cccattccca tctccacgac agcacctcca gtccagaccc 361 ctctgccggt gatccctcac cagaaggtgg tagtcaactc tccagccaac gccgactacc 421 aggaacgcTT CAACCCCAGT GCCCTGAAGG ACTCGGCCCT GTCCACCCAC AAGCCCATCG 481 AGGTGAAGGG GCTGGGCGGC AAGGCCACCA TCATCCATGC GCAGTACAAC ACGCCCATCA 541 GCATGTATTC CCAGGATGCC ATCATGGATG CCATCGCTGG GCAGGCCCAA GCCCAAGGCA 601 GTGACTTCAG TGGGAGCCTC CCTATTAAGG ACCTTGCCGT AGACAGCGCC TCCCCCGTCT 661 ACCAGGCTGT GATTAAGAGC CAGAACAAGC CAGAAGATGA GGCTGACGAG TGGGCACGCC 721 GTTCCTCCAA CCTGCAGTCT CGCTCCTTCC GCATCCTGGC CCAGATGACG GGGACAGAAT 781 TCATGCAAGA CCCTGATGAA GAAGCTCTGC GAAGGTCAAG GGAAAGGTTT GAAACGGAAC 841 GTAACAGCCC ACGTTTTGCC AAATTGCGCA ACTGGCACCA TGGCCTTTCA GCCCAAATCC 901 TTAATGTTAA AAGCTACCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC 961 CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA 1021 TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA TCCCTGTATG CGACTCTTCC 1081 CAATACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt