Construct: ORF TRCN0000472853

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013145.1_s317c1
Derived from:
ccsbBroadEn_02014
DNA Barcode:
CTGTAGACAATTTAGACTTCCTCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NAPA (8775)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472853
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8775 NAPA NSF attachment protein alpha NM_003827.4 100% 100%
2 human 8775 NAPA NSF attachment protein alpha XM_011527436.1 83% 83% 0_1ins150
3 human 8775 NAPA NSF attachment protein alpha NR_038456.2 67.1% 1_123del;1009_1318del
4 human 8775 NAPA NSF attachment protein alpha XM_011527437.1 64.7% 64.7% 0_1ins312
5 human 8775 NAPA NSF attachment protein alpha NR_038457.2 41.3% 1_123del;220_221ins197;812_1465del
6 human 8775 NAPA NSF attachment protein alpha XR_002958377.1 31.2% 1_132del;797_1954del;2176_2829del
7 mouse 108124 Napa N-ethylmaleimide sensitive ... NM_025898.3 90.5% 98.3% (many diffs)
8 mouse 108124 Napa N-ethylmaleimide sensitive ... XM_006539460.2 66.8% 58.6% (many diffs)
9 mouse 108124 Napa N-ethylmaleimide sensitive ... XR_001785464.1 35.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
951
ORF length:
885
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga caattccggg aaggaagcgg aggcgatggc gctgttggcc gaggcggagc
121gcaaagtgaa gaactcgcag tccttcttct ctggcctctt tggaggctca tccaaaatag
181aggaagcatg cgaaatctac gccagagcag caaacatgtt caaaatggcc aaaaactgga
241gtgctgctgg aaacgcgttc tgccaggctg cacagctgca cctgcagctc cagagcaagc
301acgacgcagc cacctgcttt gtggacgctg gcaacgcatt caagaaagcc gacccccaag
361aggccattaa ctgtttgatg cgagcaatcg agatctacac agacatgggc cgattcacga
421ttgcggccaa gcaccacatc tccattgctg agatctatga gacagagttg gtggacatcg
481agaaggccat tgcccactac gagcagtctg cagactacta caaaggcgag gagtccaaca
541gcTCAGCCAA CAAGTGTCTG CTGAAGGTGG CTGGTTACGC TGCGCTGCTG GAGCAGTATC
601AGAAGGCCAT TGACATCTAC GAACAGGTGG GGACCAATGC CATGGACAGC CCCCTCCTCA
661AGTACAGCGC CAAAGACTAC TTCTTCAAGG CGGCCCTCTG CCACTTCTGC ATCGACATGC
721TCAACGCCAA GCTGGCTGTC CAAAAGTATG AGGAGCTGTT CCCAGCTTTC TCTGATTCCC
781GGGAATGCAA GTTGATGAAA AAATTGCTAG AGGCCCACGA GGAGCAGAAT GTGGACAGCT
841ACACCGAGTC GGTGAAGGAA TACGACTCCA TCTCCCGGCT GGACCAGTGG CTCACCACCA
901TGCTGCTGCG CATCAAGAAG ACCATCCAGG GCGATGAGGA GGACCTGCGC TACCCAACTT
961TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
1021CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
1081CTTGTGGAAA GGACGACTGT AGACAATTTA GACTTCCTCG ACGCGTTAAG TCgacaatca
1141acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)