Construct: ORF TRCN0000473379
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000824.1_s317c1
- Derived from:
- ccsbBroadEn_15348
- DNA Barcode:
- GCTTCCGCCGAACCGATGGAGCTC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473379
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 440295 | GOLGA6L9 | golgin A6 family like 9 | NM_001291420.1 | 40.2% | 40.1% | 330G>T;332T>G;334_822del |
| 2 | human | 440295 | GOLGA6L9 | golgin A6 family like 9 | XM_011521601.2 | 26.7% | 26.6% | (many diffs) |
| 3 | human | 440295 | GOLGA6L9 | golgin A6 family like 9 | NM_198181.3 | 25.5% | 25.4% | (many diffs) |
| 4 | human | 647042 | GOLGA6L10 | golgin A6 family like 10 | NM_001164465.3 | 21% | 20.8% | (many diffs) |
| 5 | human | 643707 | GOLGA6L4 | golgin A6 family like 4 | XM_017022481.1 | 21% | 20.8% | (many diffs) |
| 6 | human | 643707 | GOLGA6L4 | golgin A6 family like 4 | XM_017022482.1 | 21% | 20.8% | (many diffs) |
| 7 | human | 100133220 | GOLGA6L3 | golgin A6 family like 3 | NM_001310153.2 | 20.6% | 20.5% | (many diffs) |
| 8 | human | 647042 | GOLGA6L10 | golgin A6 family like 10 | NM_001322400.1 | 20.4% | 19.9% | (many diffs) |
| 9 | human | 101927601 | GOLGA6L19 | golgin A6 family like 19 | XM_006725184.3 | 19.8% | 19.4% | (many diffs) |
| 10 | human | 643707 | GOLGA6L4 | golgin A6 family like 4 | NM_001267536.3 | 19.1% | 18.9% | (many diffs) |
| 11 | human | 642402 | GOLGA6L17P | golgin A6 family like 17, p... | NR_111962.1 | 17.6% | (many diffs) | |
| 12 | human | 102724117 | LOC102724117 | golgin subfamily A member 6... | XR_429586.2 | 7.4% | (many diffs) | |
| 13 | human | 374650 | GOLGA6L5P | golgin A6 family like 5, ps... | NR_003246.4 | 5.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 93
- ORF end:
- 426
- ORF length:
- 333
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA CCATGGAGCA GCTACAAGAT GAGACCAACC 121 ACCTAAGGAA GGAGCTAGAG AGTGTGGGAA GACAGCTCCA GGCTGAGGTG GAAAACAATC 181 AGATGTTGAG TCTCCTGAAC AGGAGACAGG AGGAGAGGCT ACGTGAACAG GAGGAGAGGC 241 TACGTGAACA GGAGGAGAGG CTGTGTGAAC AGGAGGAGAG GCTGTGTGAA CAGGAGGAGA 301 GGCTACGTGA ACAGGAGGAG AGGCTGTGTG AACAGGAGAA GCTGCCAGGG CAGGAGAGGC 361 TGCTGGAAGA GGTGGAGAAG CTGTTAGAAC AGGAGAGGCG GCAGGAGGAG CAGGAGAGGC 421 TTCGGTTGCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC 481 TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT 541 CTTGGCTTTA TATATCTTGT GGAAAGGACG AGCTTCCGCC GAACCGATGG AGCTCACGCG 601 TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt