Construct: ORF TRCN0000474076

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002977.1_s317c1
Derived from:
ccsbBroadEn_11925
DNA Barcode:
TTTTGCCACTACTCGGCCACGTTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARHGEF3 (50650)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474076
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 50650 ARHGEF3 Rho guanine nucleotide exch... XM_011533767.1 78.1% 77.9% 1_267delinsA;269_270insAA;661T>G
2 human 50650 ARHGEF3 Rho guanine nucleotide exch... NM_019555.3 61.2% 61% 1_609delinsA;611_612insAA;1003T>G
3 human 50650 ARHGEF3 Rho guanine nucleotide exch... XM_011533765.1 61.1% 60.9% 1_612delinsA;614_615insAA;1006T>G
4 human 50650 ARHGEF3 Rho guanine nucleotide exch... XM_011533766.2 61.1% 60.9% 1_612delinsA;614_615insAA;1006T>G
5 human 50650 ARHGEF3 Rho guanine nucleotide exch... NM_001128616.2 60.5% 60.3% 1_627delinsA;629_630insAA;1021T>G
6 human 50650 ARHGEF3 Rho guanine nucleotide exch... NM_001289698.2 60.5% 60.3% 1_627delinsA;629_630insAA;1021T>G
7 human 50650 ARHGEF3 Rho guanine nucleotide exch... XM_017006502.1 59.9% 59.6% 1_645delinsA;647_648insAA;1039T>G
8 human 50650 ARHGEF3 Rho guanine nucleotide exch... XM_024453546.1 59.9% 59.6% 1_645delinsA;647_648insAA;1039T>G
9 human 50650 ARHGEF3 Rho guanine nucleotide exch... XM_024453547.1 59.9% 59.6% 1_645delinsA;647_648insAA;1039T>G
10 human 50650 ARHGEF3 Rho guanine nucleotide exch... XM_011533764.1 59.2% 59% 1_663delinsA;665_666insAA;1057T>G
11 human 50650 ARHGEF3 Rho guanine nucleotide exch... NM_001128615.2 57.7% 57.5% 1_705delinsA;707_708insAA;1099T>G
12 human 50650 ARHGEF3 Rho guanine nucleotide exch... XM_005265186.5 57.7% 57.5% 1_705delinsA;707_708insAA;1099T>G
13 human 50650 ARHGEF3 Rho guanine nucleotide exch... XM_005265187.3 57.7% 57.5% 1_705delinsA;707_708insAA;1099T>G
14 human 50650 ARHGEF3 Rho guanine nucleotide exch... XM_017006505.1 47% 37.2% (many diffs)
15 human 50650 ARHGEF3 Rho guanine nucleotide exch... XM_017006506.2 46.4% 36.8% (many diffs)
16 human 50650 ARHGEF3 Rho guanine nucleotide exch... XM_017006504.1 45.9% 36.4% (many diffs)
17 human 50650 ARHGEF3 Rho guanine nucleotide exch... XM_017006503.1 44.3% 35.1% (many diffs)
18 mouse 71704 Arhgef3 Rho guanine nucleotide exch... XM_006519580.3 75.3% 80.5% (many diffs)
19 mouse 71704 Arhgef3 Rho guanine nucleotide exch... NM_001289687.1 53.8% 57.5% (many diffs)
20 mouse 71704 Arhgef3 Rho guanine nucleotide exch... NM_001289688.1 53.2% 56.8% (many diffs)
21 mouse 71704 Arhgef3 Rho guanine nucleotide exch... NM_027871.2 53.1% 56.7% (many diffs)
22 mouse 71704 Arhgef3 Rho guanine nucleotide exch... XM_006519576.3 52.3% 55.9% (many diffs)
23 mouse 71704 Arhgef3 Rho guanine nucleotide exch... NM_001289686.1 51.2% 54.7% (many diffs)
24 mouse 71704 Arhgef3 Rho guanine nucleotide exch... XM_006519574.3 51.2% 54.7% (many diffs)
25 mouse 71704 Arhgef3 Rho guanine nucleotide exch... XM_006519575.3 51.2% 54.7% (many diffs)
26 mouse 71704 Arhgef3 Rho guanine nucleotide exch... XM_006519579.3 51.2% 54.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1041
ORF length:
972
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gaagctccct tgcctcagct cctatgatag ctactgcagc aatcaagtag
121ccgccaaagc tctgctggac cacaaaaagc aagatcaccg agtccaggat ttcctacagc
181gatgtttaga atcccccttt agccgcaaac tagatctctg gaatttcctc gatattccaa
241gaagccgcct ggtaaaatac cctctgcttc tccgagaaat cttgaggcac acaccaaatg
301ataatccaga tcagcagcac ttggaagaag ctataaatat cattcaggga attgtggcag
361aaatcaacac caagactggt gaatctgaat gccgctatta taaagagcgg cttctttact
421tggaagaagg ccagaaagac tccctgatcg acagctctcg agtcgtgtgt tgtcatggtg
481aactgaagaa caatcggggc gtgaaactgc atgttttcct gttccaagaa gtgcttgtga
541tcactcgagc cgtcacccac aatgagcagc tttgctacca gctgtaccgt cagccaatcc
601ccgtgaaaga cctcctgctg gaagacctcc aggatggaga agtgaggctg ggtggctccc
661TGCGAGGGGC ATTCAGCAAC AATGAGAGAA TTAAAAACTT CTTCAGAGTC AGTTTCAAAA
721ATGGATCCCA AAGTCAGACC CACTCGCTAC AAGCCAATGA CACTTTCAAC AAACAGCAGT
781GGCTTAACTG TATTCGTCAA GCCAAAGAAA CAGTTTTGTG TGCTGCCGGG CAAGCTGGGG
841TGCTTGACTC CGAGGGATCG TTCCTAAATC CCACCACCGG GAGCAGAGAG CTACAGGGAG
901AAACAAAACT TGAGCAGATG GACCAATCGG ACAGTGAGTC AGACTGTAGT ATGGACACGA
961GTGAGGTCAG CCTCGACTGT GAGCGCATGG AACAGACAGA CTCTTCCTGT GGAAACAGCA
1021GGCACGGTGA AAGTAACGTC TTGCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
1081CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
1141AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGATTTT GCCACTACTC
1201GGCCACGTTG ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)