Construct: ORF TRCN0000474251
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012202.1_s317c1
- Derived from:
- ccsbBroadEn_13436
- DNA Barcode:
- TGACTGAAATGCCAATCCTTACAA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ATXN7L1 (222255)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000474251
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XM_006715904.3 | 79% | 79% | 1_423del |
2 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XM_011515946.1 | 79% | 79% | 1_423del |
3 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XM_011515947.1 | 79% | 79% | 1_423del |
4 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XM_017011860.2 | 79% | 79% | 1_423del |
5 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XM_017011861.1 | 79% | 79% | 1_423del |
6 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XM_011515945.1 | 70.2% | 70.2% | 1_678del |
7 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XM_011515941.2 | 62.6% | 62.6% | 1_954del |
8 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XM_011515942.2 | 62.6% | 62.6% | 1_954del |
9 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XM_011515943.2 | 62.6% | 62.6% | 1_954del |
10 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XM_011515944.1 | 62.6% | 62.6% | 1_954del |
11 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XM_011515938.2 | 61.1% | 61.1% | 1_1017del |
12 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XM_011515936.2 | 58.6% | 58.6% | 1_1128del |
13 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XM_017011858.1 | 58.5% | 58.5% | 1_1134del |
14 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | NM_001318229.2 | 56.7% | 56.7% | 1_678del;869_870ins306 |
15 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XM_006715900.3 | 54.6% | 54.6% | 1_1326del |
16 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XM_011515935.2 | 51% | 49.8% | (many diffs) |
17 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XM_006715901.3 | 51% | 50.6% | (many diffs) |
18 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XM_017011859.1 | 50.6% | 50.6% | 1_954del;1145_1146ins306 |
19 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | NM_138495.1 | 46.5% | 46% | (many diffs) |
20 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XM_011515937.3 | 44.2% | 44.2% | 1_1326del;1517_1518ins306 |
21 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XM_006715903.4 | 42.4% | 40.1% | 1_1326del;2499_2500ins130;2568_2569ins227 |
22 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XM_006715902.4 | 42.1% | 41.1% | (many diffs) |
23 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XM_011515939.2 | 42% | 41.7% | (many diffs) |
24 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XR_927411.2 | 41.9% | (many diffs) | |
25 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XM_005250220.4 | 40.7% | 40.2% | (many diffs) |
26 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | NM_020725.1 | 40.7% | 39.5% | (many diffs) |
27 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XM_011515940.2 | 40.7% | 39.5% | (many diffs) |
28 | human | 222255 | ATXN7L1 | ataxin 7 like 1 | XR_001744596.2 | 37.7% | (many diffs) | |
29 | mouse | 380753 | Atxn7l1 | ataxin 7-like 1 | XM_006515136.2 | 65.1% | 64.7% | (many diffs) |
30 | mouse | 380753 | Atxn7l1 | ataxin 7-like 1 | XM_017315124.1 | 62.4% | 62% | (many diffs) |
31 | mouse | 380753 | Atxn7l1 | ataxin 7-like 1 | XM_006515132.3 | 58% | 57.6% | (many diffs) |
32 | mouse | 380753 | Atxn7l1 | ataxin 7-like 1 | XM_006515133.1 | 58% | 57.6% | (many diffs) |
33 | mouse | 380753 | Atxn7l1 | ataxin 7-like 1 | XM_006515134.3 | 58% | 57.6% | (many diffs) |
34 | mouse | 380753 | Atxn7l1 | ataxin 7-like 1 | XM_011243880.1 | 58% | 57.6% | (many diffs) |
35 | mouse | 380753 | Atxn7l1 | ataxin 7-like 1 | XM_017315123.1 | 57% | 56.6% | (many diffs) |
36 | mouse | 380753 | Atxn7l1 | ataxin 7-like 1 | XM_006515126.3 | 51.8% | 51.5% | (many diffs) |
37 | mouse | 380753 | Atxn7l1 | ataxin 7-like 1 | XM_006515123.3 | 50.6% | 50.3% | (many diffs) |
38 | mouse | 380753 | Atxn7l1 | ataxin 7-like 1 | XM_006515124.3 | 48.1% | 48.1% | (many diffs) |
39 | mouse | 380753 | Atxn7l1 | ataxin 7-like 1 | XM_006515125.3 | 48.1% | 47.5% | (many diffs) |
40 | mouse | 380753 | Atxn7l1 | ataxin 7-like 1 | NM_001033436.3 | 46.4% | 46.2% | (many diffs) |
41 | mouse | 380753 | Atxn7l1 | ataxin 7-like 1 | XM_011243881.2 | 43.6% | 43.7% | (many diffs) |
42 | mouse | 380753 | Atxn7l1 | ataxin 7-like 1 | XM_006515128.3 | 40.5% | 40.3% | (many diffs) |
43 | mouse | 380753 | Atxn7l1 | ataxin 7-like 1 | XM_006515129.3 | 38.1% | 38.1% | (many diffs) |
44 | mouse | 380753 | Atxn7l1 | ataxin 7-like 1 | XM_006515130.3 | 38.1% | 37.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1665
- ORF length:
- 1599
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgga cggagccgac gaatccgaga agctagactg tcagttctcc acgcaccacc 121 ccagacctct ggcgttttgc tcatttggga gtcgcctcat gggacgaggg tactatgtgt 181 ttgatagaag atgggatcgt tttcgattcg cactaaactc catggtagaa aaacacctga 241 attcacagat gtggaagcac agaaacccga gccacagggc atcaggtccc tcccccctgt 301 tcaggacttg cctaaccaat ctgctgtcac tgagcaacat tggggctgcc tgggtgtcaa 361 ctctggagag cgtagcaccc cgctaccctc tcaacctcgc tgcccaaacc ccaggccccg 421 gcgggcccga acctggaggg atggcagccg atgggggcgt ggaagacatt aggaagaaaa 481 ggaacggcca agactctttt ttctttaaca agcatttaac tctgcatcag gagccgccaa 541 cacagtattc tctttcagcc aggaagatcc ctcctgcggc agatagcccc ctgccctcgc 601 cagcagccca catcaccacc cccgttccag catccgtttt gcagcctttc agcaacccca 661 gtgctgtgta tcttccttca gctcccatca gctcgaggct cacctcttct tacataatga 721 catcagccat gctctcaaac gcagctttcg tgacatcgcc ggacccgagc gccctcatgt 781 cccacaccac agctttccct catgtggccg caaccctcag catcatggac tcaaccttca 841 aggccccatc cgccgtgtcc ccgataccag ccgtcatccc ttccccatcc cacaagccat 901 ccaaaaccaa aaccagcaaa tcctcaaaag tcaaagacct gtccacccgt agcgacgagt 961 ctccaagtaa caaaaaaagg aagccacagt cttcgacttc ctcctcctcc tcctcctcct 1021 cctcttcctt gcagacatcc ctctcgtctc cactgtcagg gcctcacaaa aagaactgtg 1081 ttttgaatgc cagttctgct ttgaactcct atcaggcggc ccctccctat aacagcctgt 1141 ctgtgcacaa ctcaaacaat ggggtgagcc cactcagtgC CAAACTGGAG CCCTCAGGAC 1201 GGACCTCGCT GCCCGGCGGC CCCGCGGACA TAGTGAGACA GGTGGGCGCG GTGGGAGGCA 1261 GCAGTGACTC CTGTCCCCTC TCTGTGCCCT CCCTTGCGCT CCACGCAGGG GACCTCTCTC 1321 TGGCCTCACA CAATGCTGTG TCTTCTCTGC CCCTCTCTTT TGACAAATCA GAAGGAAAAA 1381 AGCGTAAGAA CTCGAGTTCT AGTAGCAAAG CCTGTAAAAT CACTAAAATG CCTGGTATGA 1441 ATAGCGTTCA CAAAAAGAAC CCGCCCAGCC TTCTCGCACC GGTGCCCGAT CCCGTTAACA 1501 GCACCTCCTC TCGGCAGGTA AGGGACCTCC TGGCACCGCC TTCACCGGCT CTGGGGGGCA 1561 GGGGGAGCTG GGCAGCGCCC CTGCTTAGCC GGGCGGCTCC GACAGGTAAC ACAAGCTTGA 1621 TTCCTGTTCT CGTTTTCCCC GAAGGCAGTT TTCACCCTCT GCTTTGCCCA ACTTTCTTGT 1681 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 1741 AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG 1801 GAAAGGACGA TGACTGAAAT GCCAATCCTT ACAAACGCGT TAAGTCgaca atcaacctct 1861 ggattacaaa atttgtgaaa gatt