Construct: ORF TRCN0000475378
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012657.1_s317c1
- Derived from:
- ccsbBroadEn_09121
- DNA Barcode:
- CCGTATGGCCACTCCGAGATAATT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ATAD3B (83858)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000475378
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 83858 | ATAD3B | ATPase family AAA domain co... | NM_031921.6 | 99.9% | 99.8% | 446A>G |
| 2 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XM_011542244.1 | 93% | 92.9% | 283_426del;590A>G |
| 3 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XM_005244806.3 | 89.3% | 88.1% | (many diffs) |
| 4 | human | 83858 | ATAD3B | ATPase family AAA domain co... | NM_001317238.2 | 88% | 83.7% | (many diffs) |
| 5 | human | 55210 | ATAD3A | ATPase family AAA domain co... | NM_001170535.3 | 86.5% | 84.5% | (many diffs) |
| 6 | human | 55210 | ATAD3A | ATPase family AAA domain co... | XM_024448098.1 | 83.2% | 81.1% | (many diffs) |
| 7 | human | 55210 | ATAD3A | ATPase family AAA domain co... | NM_018188.5 | 80.6% | 78.7% | (many diffs) |
| 8 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XR_946776.2 | 76.2% | (many diffs) | |
| 9 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XR_001737470.1 | 76% | (many diffs) | |
| 10 | human | 55210 | ATAD3A | ATPase family AAA domain co... | NM_001170536.2 | 74.6% | 72.6% | (many diffs) |
| 11 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XR_241045.2 | 74.5% | (many diffs) | |
| 12 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XM_011542241.3 | 73.2% | 67.5% | (many diffs) |
| 13 | human | 55210 | ATAD3A | ATPase family AAA domain co... | XR_001737282.1 | 72.4% | (many diffs) | |
| 14 | human | 55210 | ATAD3A | ATPase family AAA domain co... | XR_002956997.1 | 70.2% | (many diffs) | |
| 15 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XR_001737468.1 | 63.6% | (many diffs) | |
| 16 | human | 219293 | ATAD3C | ATPase family AAA domain co... | NM_001039211.3 | 59% | 56% | (many diffs) |
| 17 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XR_002957738.1 | 54.5% | (many diffs) | |
| 18 | human | 83858 | ATAD3B | ATPase family AAA domain co... | XR_001737469.1 | 49.5% | (many diffs) | |
| 19 | mouse | 108888 | Atad3a | ATPase family, AAA domain c... | NM_179203.3 | 75.2% | 79.9% | (many diffs) |
| 20 | mouse | 108888 | Atad3a | ATPase family, AAA domain c... | XM_006538467.3 | 67% | 71.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2010
- ORF length:
- 1944
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgtc gtggctcttc ggcgttaaca agggccccaa gggtgaaggc gcggggccgc 121 cgccgccttt gccgcccgcg cagcccgggg ccgagggcgg cggggaccgc ggtttgggag 181 accggccggc gcccaaggac aaatggagca acttcgaccc caccggcctg gagcgcgccg 241 ccaaggcggc gcgcgagctg gagcactcgc gttacgccaa ggaggccctg aatctggcgc 301 agatgcagga gcagacgctg cagttggagc aacagtccaa gctcaaagag tatgaggccg 361 ccgtggagca gctcaagagc gagcagatcc gggcgcaggc tgaggagagg aggaagaccc 421 tgagcgagga gacccggcag caccaggcca gggcccagta tcaagacaag ctggcccggc 481 agcgctacga ggaccaactg aagcagcagc gacttctcaa tgaggagaat ttacggaagc 541 aggaggagtc cgtgcagaag caggaagcca tgcggcgagc caccgtggag cgggagatgg 601 agctgcggca caagaatgag atgctgcgag tggagaccga ggcccgggcg cgcgccaagg 661 ccgagcggga gaatgcagac atcatccgcg agcagatccg cctgaaggcg tccgagcacc 721 gtcagaccgt cttggagtcc atcaggacgg ctggcacctt gtttggggaa ggattccgtg 781 cctttgtgac agaccgggac aaagtgacag ccacggtggc tgggctgacg ctgctggctg 841 tcggggtcta ctcagccaag aatgcgacag ccgtcactgg ccgcttcatc gaggctcggc 901 tggggaagcc gtccctagtg agggagacgt cccgcatcac ggtgctggag gcgctgcggc 961 accccatcca ggtcagccgg cggctcctca gtcgacccca ggacgtgctg gagggtgttg 1021 tgcttagtcc cagcctggaa gcacgggtgc gcgacatcgc catagcaacc aggaacacca 1081 agaagaaccg gggcctgtac aggcacatcc tgctgtatgg gccaccaggc accgggaaga 1141 cgctgtttgc caagaaactc gccctgcact caggcatgga ctacgccatc atgacaggcg 1201 gggacgtggc ccccatgggg cgggaaggcg tgaccgccat gcacaagctc tttgactggg 1261 ccaataccag ccggcgcggc ctcctgctct tcatggatga agcagacgcc ttccttcgga 1321 agcgagccac tgaggagata agcaaggacc tcagagccac actgaacgcc ttcctgtacc 1381 acatgggcca acacagcaac aaattcatgc tggtcctggc cagcaatctg cctgagcagt 1441 tcgactgtgc catcaacagc cgcattgacg tgatggtcca cttcgacctg ccgcagcagg 1501 aggagcggga gcgcctggtg agactgcatt ttgacaactg tgttcttaag ccggccacag 1561 aaggaaaacg gcgcctgaag ctggcccagt ttgactacgg gaggaagtgc tcggaggtcg 1621 cTCGGCTGAC GGAGGGCATG TCGGGCCGGG AGATCGCTCA GCTGGCCGTG TCCTGGCAGG 1681 CCACGGCATA TGCCTCCAAG GACGGGGTCC TCACTGAGGC CATGATGGAC GCCTGTGTGC 1741 AAGATGCTGT CCAGCAGTAC CGACAGAAGA TGCGCTGGCT GAAGGCGGAG GGGCCTGGGC 1801 GCGGGGTCGA GCACCCCCTA TCCGGAGTCC AAGGCGAGAC CCTCACCTCA TGGAGCCTGG 1861 CCACGGACCC CTCCTACCCC TGCCTTGCCG GCCCCTGCAC ATTTAGGATA TGCTCCTGGA 1921 TGGGGACTGG GCTGTGCCCA GGGCCTCTGT CCCCCAGGAT GTCTTGTGGT GGCGGTCGGC 1981 CGTTCTGCCC CCCAGGGCAC CCCCTGTTGT ACCCAACTTT CTTGTACAAA GTGGTTGATA 2041 TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC 2101 CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGACCGTA 2161 TGGCCACTCC GAGATAATTA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg 2221 tgaaagatt