Construct: ORF TRCN0000475651

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003283.1_s317c1
Derived from:
ccsbBroadEn_08424
DNA Barcode:
CCTCGCCGCGTCTCCTGACATAAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNRK (54861)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475651
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54861 SNRK SNF related kinase NM_001100594.1 99.7% 99.6% (many diffs)
2 human 54861 SNRK SNF related kinase NM_017719.5 99.7% 99.6% (many diffs)
3 human 54861 SNRK SNF related kinase XM_005265245.3 99.7% 99.6% (many diffs)
4 human 54861 SNRK SNF related kinase NM_001330750.1 72.8% 72.6% (many diffs)
5 mouse 20623 Snrk SNF related kinase NM_001164572.1 82.1% 88.8% (many diffs)
6 mouse 20623 Snrk SNF related kinase NM_133741.2 82.1% 88.8% (many diffs)
7 mouse 20623 Snrk SNF related kinase XM_006511998.3 82.1% 88.8% (many diffs)
8 mouse 20623 Snrk SNF related kinase XM_006511999.3 82.1% 88.8% (many diffs)
9 mouse 20623 Snrk SNF related kinase XM_006512000.3 82.1% 88.8% (many diffs)
10 mouse 20623 Snrk SNF related kinase XM_006512002.3 82.1% 88.8% (many diffs)
11 mouse 20623 Snrk SNF related kinase XM_006512003.3 82.1% 88.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2364
ORF length:
2295
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggcaggattt aagcgagggt atgatggaaa gattgctggg ttatatgatc
121tggataaaac cttgggtcga ggccattttg ccgtggttaa acttgccagg catgtcttta
181cgggtgaaaa ggtggcagta aaagttattg acaagacaaa actggacact ctagctactg
241gtcatctttt ccaggaagtg agatgcatga aactagtgca gcatcctaac atcgtccgcc
301tttatgaagt tattgacacc cagaccaaac tatatcttat tctagaactt ggggatggag
361gagatatgtt tgattatata atgaaacatg aggagggtct taatgaagac ttggccaaga
421agtattttgc tcagatagtt catgctatat cttattgcca taaactccat gtggttcaca
481gagacttaaa accagagaat gtagtcttct ttgaaaaaca aggtcttgta aagttgacag
541actttgggtt cagcaacaaa tttcaaccag ggaagaagct cactacaagc tgtggatctc
601ttgcatattc cgctccagaa attctgcttg gtgatgagta tgatgcacct gcagtagata
661tttggagtct gggagtgatc cttttcatgt tggtgtgtgg gcagccgccc tttcaagaag
721ccaatgacag tgaaacactg acaatgatca tggattgcaa atatacagta ccatcccatg
781tgtctaaaga gtgtaaagac ctaatcacac ggatgctaca gagagatccc aagagaaggg
841cttatttaga agagattgaa aatcatcctt ggcttcaggg agtggaccct tcaccagcta
901caaagtataa cattcccctt gtgtcataca aaaatctctc ggaagaggag cacaacagca
961tcattcagcg catggtgctt ggggacatag cggatcgaga cgccattgta gaagccctgg
1021aaaccaacag gtataaccat atcacagcca catacttcct gctggctgaa aggatcctga
1081gagaaaagca agagaaagaa atacagacca gatctgcaag cccgagcaat atcaaggccc
1141agtttaggca gtcatggcca accaaaattg atgtacccca ggaccttgag gatgacctca
1201cggccactcc tttgtcccac gcgactgtcc ctcagtctcc tgctcgggct gctgacagtg
1261tcctcaatgg ccacaggagc aaaggcctgt gtgactcagc taagaaagat gacctccctg
1321agttggctgg accagcactc tctacggtgc cacccgcaag cttaaaaccc acagccagtg
1381ggcggaagtg tctgttcagg gtggaagaag atgaagagga agatgaggag gacaagaaac
1441ccatgtccct ctcaacacaa gtggttttgc gccggaagcc atctgtaacc aaccgcctga
1501catccaggaa gagtgcgccc gtcgtcaacc agatctttga ggaaggggaa tctgacgatg
1561agtttgacat ggatgagaat ctgcctccca agttgagcag gttaaagatg aatatagctt
1621ctccaggtac agttcacaaa cgctaccacc ggaggaaaag tcagggccgg ggctccagct
1681gcagtagttc ggagaccagt gatgatgatt ctgaaagccg gcggcggctc gataaagata
1741gcgggttcac ctactcctgg caccgacggg atagcagcga ggggccccct ggcagtgagg
1801gggatggcgg gggccagagc aagccaagca atgccagtgg aggggtggac aaggccagcc
1861ccagtgagaa caatgctggt gggggcagtc cctccagcgg ctcgggtggc aaccccacca
1921atacatcggg taccacacgc cgctgtgccg gcccaagcaa ctccatgcag ctggcctctc
1981gcagtgctgg ggagctcgtt gagagcctca aactcatgag cctctgcctc ggctcccagc
2041ttcatgggag caccaagtac attattgatc cacagaatgg cttgtcattt tccagtgtga
2101aagtccaaga gaaatCTACG TGGAAAATGT GCATTAGCTC CACAGGGAAT GCAGGGCAGG
2161TCCCTGCAGT GGGCGGCATA AAGTTTTTCT CTGACCACAT GGCAGATACC ACCACTGAAT
2221TGGAACGGAT AAGGAGCAAG AACCTAAAAA ATAACGTGCT GCAGCTACCT CTGTGCGAAA
2281AGACCATCTC TGTGAACATC CAGCGGAACC CTAAGGAGGG GCTGCTGTGC GCATCCAGCC
2341CAGCCAGCTG TTGCCATGTC ATCTTGCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA
2401AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
2461TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAC CTCGCCGCGT
2521CTCCTGACAT AATACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
2581att

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