Construct: ORF TRCN0000476207
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018529.1_s317c1
- Derived from:
- ccsbBroadEn_10303
- DNA Barcode:
- CTCACACCATTTCATCTACCCCAA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANKRD30BP2 (149992)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000476207
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 554226 | ANKRD30BL | ankyrin repeat domain 30B like | NM_001358416.1 | 24.2% | 5.3% | (many diffs) |
| 2 | human | 554226 | ANKRD30BL | ankyrin repeat domain 30B like | NR_164000.1 | 13.8% | (many diffs) | |
| 3 | human | 554226 | ANKRD30BL | ankyrin repeat domain 30B like | NR_027020.3 | 13.4% | (many diffs) | |
| 4 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XM_024451168.1 | 13.4% | 3.6% | (many diffs) |
| 5 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XM_024451167.1 | 13% | 3.6% | (many diffs) |
| 6 | human | 554226 | ANKRD30BL | ankyrin repeat domain 30B like | NR_163999.1 | 12.4% | (many diffs) | |
| 7 | human | 554226 | ANKRD30BL | ankyrin repeat domain 30B like | NR_027019.2 | 11.6% | (many diffs) | |
| 8 | human | 644669 | LOC644669 | ankyrin repeat domain 30B p... | NR_027417.1 | 9.4% | (many diffs) | |
| 9 | human | 554226 | ANKRD30BL | ankyrin repeat domain 30B like | NR_152415.2 | 8% | (many diffs) | |
| 10 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XM_011525666.2 | 6.5% | 1.1% | (many diffs) |
| 11 | human | 149992 | ANKRD30BP2 | ankyrin repeat domain 30B p... | NR_026916.1 | 5.9% | 1_622del;827_3438del | |
| 12 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XM_011525665.2 | 5.1% | 1.4% | (many diffs) |
| 13 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XM_011519758.2 | 4.9% | 1.1% | (many diffs) |
| 14 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XM_011525664.2 | 4.8% | 1.3% | (many diffs) |
| 15 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | NR_160272.1 | 4.6% | (many diffs) | |
| 16 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | NM_052997.2 | 4.4% | 1.2% | (many diffs) |
| 17 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XR_935062.2 | 3.9% | (many diffs) | |
| 18 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XM_011519757.3 | 3.7% | 1% | (many diffs) |
| 19 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XR_935061.2 | 3.6% | (many diffs) | |
| 20 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | NM_001367607.1 | 3.6% | 1% | (many diffs) |
| 21 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XR_001747257.1 | 3.6% | (many diffs) | |
| 22 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XR_935060.2 | 3.6% | (many diffs) | |
| 23 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XR_935059.2 | 3.5% | (many diffs) | |
| 24 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XR_001753189.1 | 3.5% | (many diffs) | |
| 25 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XR_001753190.1 | 3.5% | (many diffs) | |
| 26 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XR_935058.2 | 3.5% | (many diffs) | |
| 27 | human | 374860 | ANKRD30B | ankyrin repeat domain 30B | XR_935057.2 | 3.4% | (many diffs) | |
| 28 | human | 554226 | ANKRD30BL | ankyrin repeat domain 30B like | XR_002959312.1 | 3.2% | (many diffs) | |
| 29 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XR_930524.3 | 2.1% | (many diffs) | |
| 30 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XR_002957044.1 | 2.1% | (many diffs) | |
| 31 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XR_002957048.1 | 1.8% | (many diffs) | |
| 32 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XR_002957046.1 | 1.8% | (many diffs) | |
| 33 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XR_002957047.1 | 1.8% | (many diffs) | |
| 34 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XR_002957043.1 | 1.7% | (many diffs) | |
| 35 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XR_002957041.1 | 1.7% | (many diffs) | |
| 36 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XR_002957040.1 | 1.7% | (many diffs) | |
| 37 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XR_002957042.1 | 1.7% | (many diffs) | |
| 38 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XR_002957045.1 | 1.7% | (many diffs) | |
| 39 | human | 91074 | ANKRD30A | ankyrin repeat domain 30A | XR_002957039.1 | 1.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 93
- ORF end:
- 297
- ORF length:
- 204
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA CCATGCAAAT GCAAATGGAG TTGATAAGTT 121 TAAATGCATT CATCAACAAC TTTTGGAATA TAAACAAAAG ATATCTAAAA ATTCTCAAAA 181 TAGTAATCCA GAAGGAACAT CTGAAGGAAC ACCTGACGAG GCTGCACCCT TGGCGGAAAG 241 AACACCTGAC ACGGCTGAAA GCTTGGTGGA AAGAACACCT GACGAATAGG ATACAGTTGC 301 CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC 361 TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT 421 ATATATCTTG TGGAAAGGAC GACTCACACC ATTTCATCTA CCCCAAACGC GTTAAGTCga 481 caatcaacct ctggattaca aaatttgtga aagatt