Construct: ORF TRCN0000476241

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010276.1_s317c1
Derived from:
ccsbBroadEn_01736
DNA Barcode:
GCGGACTCAGCGCCTGTAGTGTGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UBE2D2 (7322)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476241
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7322 UBE2D2 ubiquitin conjugating enzym... NM_003339.3 100% 100%
2 human 7323 UBE2D3 ubiquitin conjugating enzym... NM_003340.6 86.6% 97.2% (many diffs)
3 human 7323 UBE2D3 ubiquitin conjugating enzym... NM_181886.3 86.6% 97.2% (many diffs)
4 human 7323 UBE2D3 ubiquitin conjugating enzym... NM_181887.2 86.6% 97.2% (many diffs)
5 human 7323 UBE2D3 ubiquitin conjugating enzym... NM_181888.3 86.6% 97.2% (many diffs)
6 human 7323 UBE2D3 ubiquitin conjugating enzym... NM_181889.2 86.6% 97.2% (many diffs)
7 human 7323 UBE2D3 ubiquitin conjugating enzym... NM_181890.2 86.6% 97.2% (many diffs)
8 human 7323 UBE2D3 ubiquitin conjugating enzym... NM_181891.3 86.6% 97.2% (many diffs)
9 human 7323 UBE2D3 ubiquitin conjugating enzym... XM_024454202.1 86.6% 97.2% (many diffs)
10 human 7323 UBE2D3 ubiquitin conjugating enzym... NM_181893.2 84.8% 92.6% (many diffs)
11 human 7323 UBE2D3 ubiquitin conjugating enzym... NM_181892.3 83.7% 95.9% (many diffs)
12 human 7322 UBE2D2 ubiquitin conjugating enzym... XM_017009820.1 81.9% 78.6% (many diffs)
13 human 7322 UBE2D2 ubiquitin conjugating enzym... NM_181838.1 80.2% 80.2% 0_1ins87
14 human 51619 UBE2D4 ubiquitin conjugating enzym... NM_015983.4 78% 93.1% (many diffs)
15 human 7323 UBE2D3 ubiquitin conjugating enzym... NM_001300795.1 70.7% 78.9% (many diffs)
16 human 7323 UBE2D3 ubiquitin conjugating enzym... XM_017008584.2 70.7% 78.9% (many diffs)
17 human 51619 UBE2D4 ubiquitin conjugating enzym... XM_024446796.1 58.7% 70.7% (many diffs)
18 human 51619 UBE2D4 ubiquitin conjugating enzym... XM_011515422.3 58% 68.7% (many diffs)
19 mouse 56550 Ube2d2a ubiquitin-conjugating enzym... NM_019912.2 97.2% 100% (many diffs)
20 mouse 73318 Ube2d2b ubiquitin-conjugating enzym... NM_001276397.1 92.5% 92.5% (many diffs)
21 mouse 66105 Ube2d3 ubiquitin-conjugating enzym... NM_025356.4 87.3% 97.2% (many diffs)
22 mouse 66105 Ube2d3 ubiquitin-conjugating enzym... XM_006501873.2 87.3% 97.2% (many diffs)
23 mouse 66105 Ube2d3 ubiquitin-conjugating enzym... XM_006501874.2 87.3% 97.2% (many diffs)
24 mouse 66105 Ube2d3 ubiquitin-conjugating enzym... XM_006501875.2 87.3% 97.2% (many diffs)
25 mouse 56550 Ube2d2a ubiquitin-conjugating enzym... XM_006526120.2 78.6% 80.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
510
ORF length:
441
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggctctgaag agaatccaca aggaattgaa tgatctggca cgggaccctc
121cagcacagtg ttcagcaggt cctgttggag atgatatgtt ccattggcaa gctacaataa
181tggggccaaa tgacagtccc tatcagggtg gagtattttt cttgacaatt catttcccaa
241cagattaccc cttcaaacca cctaaggttg catttacaac aagaatttat catccaaata
301ttaacagtaa tggcagcatt tgtcttgata ttcTACGATC ACAGTGGTCT CCAGCACTAA
361CTATTTCAAA AGTACTCTTG TCCATCTGTT CTCTGTTGTG TGATCCCAAT CCAGATGATC
421CTTTAGTGCC TGAGATTGCT CGGATCTACA AAACAGATAG AGAAAAGTAC AACAGAATAG
481CTCGGGAATG GACTCAGAAG TATGCGATGT TGCCAACTTT CTTGTACAAA GTGGTTGATA
541TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTTTAT
601ATATCTTGTG GAAAGGACGA GCGGACTCAG CGCCTGTAGT GTGAACGCGT TAAGTCgaca
661atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)