Construct: ORF TRCN0000478142

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004245.1_s317c1
Derived from:
ccsbBroadEn_13444
DNA Barcode:
GAGAGTCATAAAAGACCTGAGCGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
AKR7L (246181)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478142
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 246181 AKR7L aldo-keto reductase family ... NM_001348421.1 46.2% 32.3% 1_337del;508_704del
2 human 22977 AKR7A3 aldo-keto reductase family ... NM_012067.3 44.9% 30.8% (many diffs)
3 human 22977 AKR7A3 aldo-keto reductase family ... XM_017000714.2 42.6% 18.9% (many diffs)
4 human 8574 AKR7A2 aldo-keto reductase family ... NM_001320979.1 40.8% 30.5% (many diffs)
5 human 8574 AKR7A2 aldo-keto reductase family ... NM_003689.3 40.2% 28.4% (many diffs)
6 human 22977 AKR7A3 aldo-keto reductase family ... XM_011541046.3 34.7% 15.4% (many diffs)
7 human 8574 AKR7A2 aldo-keto reductase family ... XR_946785.2 34.4% (many diffs)
8 human 246182 AKR7A2P1 aldo-keto reductase family ... NR_002796.2 32.6% (many diffs)
9 human 22977 AKR7A3 aldo-keto reductase family ... XR_001737055.1 26% (many diffs)
10 human 246181 AKR7L aldo-keto reductase family ... NR_040289.2 21% 1_385del;845_2183del
11 human 246181 AKR7L aldo-keto reductase family ... NR_040288.2 19.2% 1_385del;556_752del;1042_2380del
12 mouse 110198 Akr7a5 aldo-keto reductase family ... NM_025337.3 36.6% 25.4% (many diffs)
13 mouse 110198 Akr7a5 aldo-keto reductase family ... XR_390721.3 35.8% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
528
ORF length:
459
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gcacctgacc acagcgcccc ggtggaagag acactgcgtg cctgccacca
121gctgcaccag gagggcaagt tcgtggagct tggcctctcc aactatgccg cctgggaagt
181ggccgagatc tgtacccTCT GCAAGAGCAA CGGCTGGATC CTGCCCACTG TGTACCAGCT
241TCTGGAAGGA GCACCACTTC GAGGGCATTG CCCTGGTGGA GAAGGCCCTG CAGGCCGCGT
301ATGGCGCCAG CGCTCCCAGC ATGACCTCGG CCGCCCTCCG GTGGATGTAC CACCACTCAC
361AGCTGCAGGG TGCCCACGGG GACGCGGTCA TCCTGGGCAT GTCCAGCCTG GAGCAGCTGG
421AGCAGAACTT GGCAGCGGCA GAGGAAGGGC CCCTGGAGCC GGCTGTCGTG GACGCCTTTA
481ATCAAGCCTG GCATTTGTTT GCCCACGAAT GTCCCAACTA CTTCATCTTG CCAACTTTCT
541TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
601CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
661GTGGAAAGGA CGAGAGAGTC ATAAAAGACC TGAGCGTACG CGTTAAGTCg acaatcaacc
721tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)