Construct: ORF TRCN0000479086
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004248.1_s317c1
- Derived from:
- ccsbBroadEn_10342
- DNA Barcode:
- GTGACACGCCACTTGGAGCACCGT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PDXDC2P-NPIPB14P (283970)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479086
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_024450197.1 | 85.9% | 82.6% | (many diffs) |
| 2 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_024452518.1 | 85.9% | 82.6% | (many diffs) |
| 3 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_024450194.1 | 84.8% | 83.4% | (many diffs) |
| 4 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | NM_001324021.1 | 84.8% | 80% | (many diffs) |
| 5 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_017030210.2 | 84.8% | 80% | (many diffs) |
| 6 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_017023065.1 | 83.6% | 82.1% | (many diffs) |
| 7 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | NM_001324020.1 | 81.3% | 79.8% | (many diffs) |
| 8 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | NM_001285449.1 | 81.1% | 79.7% | (many diffs) |
| 9 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_017030209.2 | 81.1% | 79.7% | (many diffs) |
| 10 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_024450196.1 | 80.7% | 79.4% | (many diffs) |
| 11 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_024450195.1 | 78.3% | 76.9% | (many diffs) |
| 12 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_024452517.1 | 78.3% | 76.9% | (many diffs) |
| 13 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_017030208.2 | 77% | 72.7% | (many diffs) |
| 14 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_024452516.1 | 75% | 73.8% | (many diffs) |
| 15 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | NM_001285450.2 | 74.9% | 72.7% | (many diffs) |
| 16 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_017030207.1 | 74.1% | 72.8% | (many diffs) |
| 17 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_017030206.1 | 57.5% | 54% | (many diffs) |
| 18 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_017023063.1 | 57.2% | 55.9% | (many diffs) |
| 19 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_017030205.2 | 56% | 54.7% | (many diffs) |
| 20 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_006720865.2 | 52.8% | 50.4% | (many diffs) |
| 21 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_017023064.1 | 52.8% | 50.4% | (many diffs) |
| 22 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | NM_001285445.2 | 52.7% | 49.9% | (many diffs) |
| 23 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | NM_001285444.2 | 52.6% | 49.4% | (many diffs) |
| 24 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_006725228.2 | 52.6% | 49.4% | (many diffs) |
| 25 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_017030204.1 | 52.5% | 51.4% | (many diffs) |
| 26 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | NM_001285447.1 | 52.3% | 51.2% | (many diffs) |
| 27 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_005255176.3 | 52.3% | 51.2% | (many diffs) |
| 28 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_017023059.1 | 52.3% | 51.2% | (many diffs) |
| 29 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_017023061.2 | 52.3% | 51.2% | (many diffs) |
| 30 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_017023062.1 | 52.3% | 51.2% | (many diffs) |
| 31 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_017030203.2 | 52.3% | 51.2% | (many diffs) |
| 32 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_024452515.1 | 52.3% | 51.2% | (many diffs) |
| 33 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | NM_001324019.2 | 51.4% | 50.3% | (many diffs) |
| 34 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | NM_015027.4 | 51.3% | 50.2% | (many diffs) |
| 35 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_006725225.2 | 51.3% | 50.2% | (many diffs) |
| 36 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_006725226.2 | 51.1% | 48.2% | (many diffs) |
| 37 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_006725224.2 | 50.8% | 49.6% | (many diffs) |
| 38 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_017023060.1 | 50.8% | 49.6% | (many diffs) |
| 39 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_017030202.1 | 50.4% | 49.3% | (many diffs) |
| 40 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | XM_005255173.1 | 50.2% | 49.1% | (many diffs) |
| 41 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_006725223.1 | 50.2% | 49.1% | (many diffs) |
| 42 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_017030201.1 | 49.5% | 46.5% | (many diffs) |
| 43 | human | 23042 | PDXDC1 | pyridoxal dependent decarbo... | NM_001285448.1 | 48.8% | 45.3% | (many diffs) |
| 44 | human | 102724985 | LOC102724985 | pyridoxal-dependent decarbo... | XM_017030200.1 | 48.5% | 47.4% | (many diffs) |
| 45 | human | 283970 | PDXDC2P-NPIPB14P | nuclear pore complex-intera... | NR_003610.1 | 28.7% | 1_343del;1580_4298del | |
| 46 | mouse | 94184 | Pdxdc1 | pyridoxal-dependent decarbo... | NM_001039533.2 | 50.7% | 52.6% | (many diffs) |
| 47 | mouse | 94184 | Pdxdc1 | pyridoxal-dependent decarbo... | XM_011246055.3 | 46.6% | 48.3% | (many diffs) |
| 48 | mouse | 94184 | Pdxdc1 | pyridoxal-dependent decarbo... | NM_053181.3 | 45.7% | 47.5% | (many diffs) |
| 49 | mouse | 94184 | Pdxdc1 | pyridoxal-dependent decarbo... | NM_001357225.1 | 45.7% | 47.4% | (many diffs) |
| 50 | mouse | 94184 | Pdxdc1 | pyridoxal-dependent decarbo... | NM_001291017.1 | 45.6% | 47.4% | (many diffs) |
| 51 | mouse | 94184 | Pdxdc1 | pyridoxal-dependent decarbo... | XM_011246054.3 | 45.3% | 47.1% | (many diffs) |
| 52 | mouse | 94184 | Pdxdc1 | pyridoxal-dependent decarbo... | XM_011246053.2 | 45.3% | 47% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1302
- ORF length:
- 1236
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggt gagcatcctc cagttagttc agaatctgat gcatggagat gaagatgagg 121 agccccagag ccccagaatc caaaatattg gagaacaagg tcatgtggct gtgttgggac 181 atagtctggg agcttatatt ttgactctgg acgaagagaa gctgagaaaa cttacaacta 241 ggatactttc agataccacc ttatggctat gcagaatttt cagatatgaa aatgggtgtg 301 cttatttcca cgaagaggaa agagaaggac ttgcaaagat atgtaggctt gccattcatt 361 ctcaatatga agacttcgta gtggatggct tcagtgggtt atataacaag aagcctgtca 421 tatatcttag tgctgctgct agacctggcc tgggccaata cctttgtaat cagctcggct 481 tgcccttccc ctgcttgtgc cgtgtaccct gtaacactat gtttggatcc cagcatcaga 541 tggatgttgc cttcctggag aaactgatta aagatgatat agagcgagga agactgcccc 601 tgttgcttgt cgcaaatgca ggaacggcag cagtaggaca cacagacaag attgggagat 661 tgaaagaact ctgtgagcag tatggcatat ggcttcatgt ggagggtgtg aatctggcaa 721 cattggctct gggttatgtc tcctcatcag tgctggctgc agccaaatgt gatagcatga 781 cgatgactcc tggcccgtgg ctgggtttgc cagctgttcc tgcggtgaca ctgtataaac 841 acgaccctgc cttgacttta gttgctggtc ttatatcaaa taagcccaca gacaaactcc 901 gtgccctgcc TCTGTGGTTA TCTTTACAAT ACTTGGGACT TGATGGGTTT GTGGAGAGGA 961 TCAAGCATGC CTGTCAACTG AGTCAATGGT TGCAGGAAAG TTTGAAGAAA GTGAATTACA 1021 TCAAAATCTT GGTGGAAGAT GAGCTCAGCT CCCCAGTGGT GGTGTTCAGA TTTTTCCAAG 1081 AATTACCAGG CTCAGATCCA GTGTTTAAAG CCGTCCCAGT GCCCAACATG ACACCTTCAG 1141 CAGTCGGCCG GGAGAGGCAC TCGTGTGATG CGCTGAATCT CTGGCTGGGA GAACAGCTGA 1201 AGCAGCTGGT GCCTGCGAGC GGCCTCACAG TCATGGATCT GGAAGCTGAG GGCACGTGTT 1261 TGCGGTTCAG CCCTTTGATG ACCGCAGCAG GTATGATCTC GTGCCCAACT TTCTTGTACA 1321 AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT 1381 AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA 1441 AGGACGAGTG ACACGCCACT TGGAGCACCG TACGCGTTAA GTCgacaatc aacctctgga 1501 ttacaaaatt tgtgaaagat t