Construct: ORF TRCN0000479549

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018363.1_s317c1
Derived from:
ccsbBroadEn_02036
DNA Barcode:
CAGCCCGAGTTGTATTTCACCCGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARHGEF7 (8874)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479549
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001113511.2 100% 100%
2 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_145735.3 97.3% 97.3% 252_253ins63
3 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_017020814.1 95.9% 95.9% 252_253ins63;1950_1985del
4 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001113512.2 93.7% 93.7% 165_166ins150
5 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354047.1 88.4% 88.4% 251_252ins279
6 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001320852.1 88.1% 86.6% (many diffs)
7 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354046.1 88% 86.7% (many diffs)
8 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_006719956.3 86.8% 85.4% (many diffs)
9 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_017020815.1 78.5% 76.8% (many diffs)
10 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001320853.2 78.1% 76.5% (many diffs)
11 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001330597.2 77.8% 77.8% 0_1ins534
12 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001330598.2 77.8% 77.8% 0_1ins534
13 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354056.1 77.8% 77.8% 0_1ins534
14 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354057.2 77.8% 77.8% 0_1ins534
15 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354058.2 77.8% 77.8% 0_1ins534
16 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354059.2 77.8% 77.8% 0_1ins534
17 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354060.2 77.8% 77.8% 0_1ins534
18 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_017020816.1 77% 75.4% (many diffs)
19 human 8874 ARHGEF7 Rho guanine nucleotide exch... XR_001749712.1 71.4% (many diffs)
20 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354048.1 70.3% 69.1% (many diffs)
21 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354049.2 70.3% 69.1% (many diffs)
22 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354050.2 70.3% 69.1% (many diffs)
23 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354051.2 70.3% 69.1% (many diffs)
24 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001113513.2 69.6% 67.7% (many diffs)
25 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001320851.2 69.6% 67.7% (many diffs)
26 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354052.2 69.6% 67.7% (many diffs)
27 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354053.2 69.6% 67.7% (many diffs)
28 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_003899.5 69.6% 67.7% (many diffs)
29 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354054.2 68.6% 66.7% (many diffs)
30 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_017020819.1 68.6% 66.7% (many diffs)
31 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_017020820.1 68.6% 66.7% (many diffs)
32 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_017020821.2 68.6% 66.7% (many diffs)
33 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_017020822.1 68.6% 66.7% (many diffs)
34 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_017020823.2 68.6% 66.7% (many diffs)
35 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_024449428.1 68.6% 66.7% (many diffs)
36 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001320854.2 67.7% 66.2% (many diffs)
37 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_011521133.2 62.7% 62.6% 252_253ins63;1508_1509insAA;1512_1512delAins833
38 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354055.2 61.1% 58.6% (many diffs)
39 human 8874 ARHGEF7 Rho guanine nucleotide exch... NM_001354061.2 58.5% 58.1% 0_1ins965;49_107del
40 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_017020829.2 58.5% 58.1% 0_1ins965;49_107del
41 human 8874 ARHGEF7 Rho guanine nucleotide exch... XM_017020828.1 50.7% 48.1% (many diffs)
42 human 8874 ARHGEF7 Rho guanine nucleotide exch... XR_002957481.1 39% (many diffs)
43 mouse 54126 Arhgef7 Rho guanine nucleotide exch... NM_001113517.1 84.8% 92% (many diffs)
44 mouse 54126 Arhgef7 Rho guanine nucleotide exch... XM_006508843.3 77.9% 81.8% (many diffs)
45 mouse 54126 Arhgef7 Rho guanine nucleotide exch... XM_006508841.2 76.3% 81.9% (many diffs)
46 mouse 54126 Arhgef7 Rho guanine nucleotide exch... XM_006508844.2 68.9% 73.9% (many diffs)
47 mouse 54126 Arhgef7 Rho guanine nucleotide exch... XM_006508845.3 67.6% 72.8% (many diffs)
48 mouse 54126 Arhgef7 Rho guanine nucleotide exch... NM_017402.4 61.3% 63.7% (many diffs)
49 mouse 54126 Arhgef7 Rho guanine nucleotide exch... NM_001113518.1 60.6% 65% (many diffs)
50 mouse 54126 Arhgef7 Rho guanine nucleotide exch... XM_017312901.1 58.9% 62.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2475
ORF length:
2409
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa ttccgccgag caaaccgtta cgtggctcat cactctgggg gtgctggagt
121cgcccaaaaa aaccatctcg gacccggagg gctttctgca ggcgtcgctg aaggatgggg
181tggtcctctg caggctgctg gagcgcctgc tccccgggac catcgagaaa gtctaccccg
241agccccggag cgagagcgag tgcctgagca acatccgcga gttcctgcgc ggctgcgggg
301cttccctgcg gctggagctc ctgtttcctc cttcccagcc tcctcagcat ctggtaacca
361ccattctctt gtctgcttct acgtttgatg caaatgattt gtatcagggg cagaatttta
421acaaggtcct cagttcctta gtgactctaa ataaagtaac agcagacatc gggctgggga
481gtgactccgt gtgtgcccgg ccctcgtctc accgcataaa gtcttttgac tcccttggat
541cacagtcttt gcacactcgg acttcaaaac tgttccaggg ccagtatcgg agtttggaca
601tgaccgataa tagcaacaat caactggtag taagagcaaa gtttaacttc cagcagacca
661atgaggacga gctttccttc tcaaaaggag acgtcatcca tgtcacccgt gtggaagagg
721gaggctggtg ggagggcaca ctcaacggcc ggaccggctg gttccccagc aactacgtgc
781gcgaggtcaa ggccagcgag aagcctgtgt ctcccaaatc aggaacactg aagagccctc
841ccaaaggatt tgatacgact gccataaaca aaagctatta caatgtggtg ctacagaata
901ttttagaaac agaaaatgaa tattctaaag aacttcagac tgtgctttca acgtacctac
961ggccattgca gaccagtgag aagttaagtt cagcaaacat ttcatattta atgggaaatc
1021tagaagaaat atgttctttc cagcaaatgc tcgtacagtc tttagaagaa tgcaccaagt
1081tgcccgaagc tcagcagaga gtcggaggct gctttttaaa cctgatgcca cagatgaaaa
1141ccctgtacct cacgtattgt gccaatcacc cttctgcagt gaatgtcctc acggaacaca
1201gtgaggagtt gggggagttc atggagacca aaggtgccag cagccctggg attctcgtgc
1261tgaccacggg cctgagcaaa cccttcatgc gcctggataa ataccctacg ctgctcaaag
1321agctcgagag acacatggag gattatcata cagatagaca agatattcaa aaatccatgg
1381ctgccttcaa aaacctttca gcccaatgtc aagaagtccg gaagaggaaa gagcttgagc
1441tgcagatcct gacggaagcc atccggaact gggagggcga tgacattaaa actctgggca
1501acgtcactta catgtcccag gtcctgattc agtgtgccgg aagtgaggaa aagaatgaaa
1561gatatcttct actcttccca aatgttttgc taatgttgtc tgccagtcct aggatgagtg
1621gctttatcta tcagggaaag cttccaacga caggaatgac aatcacaaag cttgaggaca
1681gtgaaaatca tagaaatgca tttgaaatat cagggagcat gattgagcgg atattagtgt
1741cgtgcaacaa ccagcaggat ctgcaggaat gggtggagca cctacagaag caaacgaagg
1801tcacgtctgt gggaaacccc accataaagc ctcattcagt gccatctcat accctcccct
1861cccacccggt cactccgtcc agcaagcacg cagacagcaa gcccgcgccg ctgacgcccg
1921cctaccacac gctgccccac ccctcccacc acggcacccc gcacaccacc atcaactggg
1981gacccctgga gcctccgaaa acacccaagc cctggagcct gagctgcctg cggcccgcgc
2041ctcccctccg gccctcagct gctctctgct acaaggagga tcttagtaag agcccTAAGA
2101CCATGAAAAA GCTGCTGCCC AAGCGCAAAC CTGAACGGAA GCCTTCAGAT GAGGAGTTCG
2161CGTCCCGGAA AAGCACAGCT GCTTTGGAAG AAGATGCTCA GATTCTGAAA GTCATTGAAG
2221CTTACTGCAC CAGCGCCAAA ACAAGGCAAA CACTCAATTC AACATGGCAA GGCACTGACC
2281TGATGCATAA TCACGTCTTG GCTGATGATG ACCAACCAAG CCTAGACTCC CTGGGGCGTC
2341GCAGTAGCCT TTCTCGTTTG GAGCCTTCAG ACCTCTCGGA AGACTCTGAC TATGACAGTA
2401TATGGACAGC CCATAGTTAC AGAATGGGTT CTACATCTCG TAAGAGCTGT TGCTCATATA
2461TCTCTCACCA GAACTACCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
2521CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
2581TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA CAGCCCGAGT TGTATTTCAC
2641CCGAACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)