Construct: ORF TRCN0000479920

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006001.1_s317c1
Derived from:
ccsbBroadEn_05129
DNA Barcode:
GAGTGCTCAAGCAACGTTACGTGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
IFNLR1 (163702)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479920
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 163702 IFNLR1 interferon lambda receptor 1 NM_170743.4 100% 100%
2 human 163702 IFNLR1 interferon lambda receptor 1 NM_173064.3 94.4% 94.4% 800_801ins87
3 human 163702 IFNLR1 interferon lambda receptor 1 XM_006710394.4 91.5% 89.1% (many diffs)
4 human 163702 IFNLR1 interferon lambda receptor 1 XM_017000479.1 84% 84% 0_1ins249
5 human 163702 IFNLR1 interferon lambda receptor 1 XM_024453668.1 61.3% 52.5% 0_1ins472;197_198ins131
6 human 163702 IFNLR1 interferon lambda receptor 1 NM_173065.3 46.9% 43.9% 669_670ins131;732_733ins697
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1629
ORF length:
1560
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggcggggccc gagcgctggg gccccctgct cctgtgcctg ctgcaggccg
121ctccagggag gccccgtctg gcccctcccc agaatgtgac gctgctctcc cagaacttca
181gcgtgtacct gacatggctc ccagggcttg gcaaccccca ggatgtgacc tattttgtgg
241cctatcagag ctctcccacc cgtagacggt ggcgcgaagt ggaagagtgt gcgggaacca
301aggagctgct atgttctatg atgtgcctga agaaacagga cctgtacaac aagttcaagg
361gacgcgtgcg gacggtttct cccagctcca agtccccctg ggtggagtcc gaatacctgg
421attacctttt tgaagtggag ccggccccac ctgtcctggt gctcacccag acggaggaga
481tcctgagtgc caatgccacg taccagctgc ccccctgcat gcccccactg gatctgaagt
541atgaggtggc attctggaag gagggggccg gaaacaagac cctatttcca gtcactcccc
601atggccagcc agtccagatc actctccagc cagctgccag cgaacaccac tgcctcagtg
661ccagaaccat ctacacgttc agtgtcccga aatacagcaa gttctctaag cccacctgct
721tcttgctgga ggtcccagaa gccaactggg ctttcctggt gctgccatcg cttctgatac
781tgctgttagt aattgccgca gggggtgtga tctggaagac cctcatgggg aacccctggt
841ttcagcgggc aaagatgcca cgggccctgg acttttctgg acacacacac cctgtggcaa
901cctttcagcc cagcagacca gagtccgtga atgacttgtt cctctgtccc caaaaggaac
961tgaccagagg ggtcaggccg acgcctcgag tcagggcccc agccacccaa cagacaagat
1021ggaagaagga ccttgcagag gacgaagagg aggaggatga ggaggacaca gaagatggcg
1081tcagcttcca gccctacatt gaaccacctt ctttcctggg gcaagagcac caggctccag
1141ggcactcgga ggctggtggg gtggactcag ggaggcccag ggctcctctg gtcccaagcg
1201aaggctcctc tgcttgggat tcttcagaca gaagctgggc cagcactgtg gactcctcct
1261gggacagggc tgggtcctct ggctatttgg ctgagaaggg gccaggccaa gggccgggtg
1321gggatgggca ccaagaatct ctcccaccac ctgaattctc caaggactcg ggtttcctgg
1381aagagctccc agaagataac cTCTCCTCCT GGGCCACCTG GGGCACCTTA CCACCGGAGC
1441CGAATCTGGT CCCTGGGGGA CCCCCAGTTT CTCTTCAGAC ACTGACCTTC TGCTGGGAAA
1501GCAGCCCTGA GGAGGAAGAG GAGGCGAGGG AATCAGAAAT TGAGGACAGC GATGCGGGCA
1561GCTGGGGGGC TGAGAGCACC CAGAGGACCG AGGACAGGGG CCGGACATTG GGGCATTACA
1621TGGCCAGGTT GCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
1681CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTACTTCGA
1741TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAGAGTGC TCAAGCAACG TTACGTGCAC
1801GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)