Construct: ORF TRCN0000479986
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010859.1_s317c1
- Derived from:
- ccsbBroadEn_11547
- DNA Barcode:
- CACCGGTCCGCCGCCTTCCTTCTT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZMYND11 (10771)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479986
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370118.1 | 93.3% | 93.2% | (many diffs) |
| 2 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_212479.3 | 92.9% | 92.9% | 1_120del |
| 3 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001202468.1 | 92.7% | 92.7% | 1_120del;696_698delAGC |
| 4 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370116.1 | 90.4% | 90.3% | (many diffs) |
| 5 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001330057.1 | 89.6% | 89.5% | (many diffs) |
| 6 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370112.1 | 89.6% | 89.5% | (many diffs) |
| 7 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370115.1 | 87.2% | 87.1% | (many diffs) |
| 8 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370097.1 | 87.1% | 87% | (many diffs) |
| 9 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370098.1 | 87.1% | 87% | (many diffs) |
| 10 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370099.1 | 87.1% | 87% | (many diffs) |
| 11 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370100.2 | 87.1% | 87% | (many diffs) |
| 12 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370101.1 | 87.1% | 87% | (many diffs) |
| 13 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370102.1 | 87.1% | 87% | (many diffs) |
| 14 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_006624.5 | 87.1% | 87% | (many diffs) |
| 15 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370121.1 | 83.7% | 83.6% | (many diffs) |
| 16 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370117.1 | 83.3% | 83.2% | (many diffs) |
| 17 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001202467.1 | 83.2% | 83.2% | 1_120del;276_277ins162;534_536delAGC |
| 18 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370113.1 | 82% | 81.8% | (many diffs) |
| 19 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370114.1 | 82% | 81.8% | (many diffs) |
| 20 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370120.1 | 81.1% | 81% | (many diffs) |
| 21 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | XM_017015594.1 | 80.4% | 80.3% | (many diffs) |
| 22 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370119.1 | 79% | 78.9% | (many diffs) |
| 23 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001202466.1 | 78.3% | 78.2% | (many diffs) |
| 24 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370111.1 | 78.3% | 78.2% | (many diffs) |
| 25 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001202464.1 | 78.1% | 78% | (many diffs) |
| 26 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370103.1 | 78.1% | 78% | (many diffs) |
| 27 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370104.1 | 78.1% | 78% | (many diffs) |
| 28 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370105.1 | 78.1% | 78% | (many diffs) |
| 29 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370106.1 | 78.1% | 78% | (many diffs) |
| 30 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370107.1 | 78.1% | 78% | (many diffs) |
| 31 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370108.1 | 78.1% | 78% | (many diffs) |
| 32 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370109.1 | 78.1% | 78% | (many diffs) |
| 33 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001202465.1 | 73% | 72.9% | (many diffs) |
| 34 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370110.1 | 73% | 72.9% | (many diffs) |
| 35 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370123.1 | 72.5% | 72.4% | (many diffs) |
| 36 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370124.1 | 72.5% | 72.4% | (many diffs) |
| 37 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NM_001370122.1 | 70.4% | 70.3% | (many diffs) |
| 38 | human | 10771 | ZMYND11 | zinc finger MYND-type conta... | NR_163254.1 | 39% | (many diffs) | |
| 39 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | NM_001347481.1 | 83.8% | 90.7% | (many diffs) |
| 40 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | NM_001347477.1 | 78.4% | 84.8% | (many diffs) |
| 41 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | NM_001199141.2 | 78.2% | 84.7% | (many diffs) |
| 42 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | NM_001347474.1 | 78.2% | 84.7% | (many diffs) |
| 43 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | NM_001347476.1 | 78.2% | 84.7% | (many diffs) |
| 44 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | XM_006516506.3 | 78.2% | 84.7% | (many diffs) |
| 45 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | XM_006516502.3 | 76.3% | 82.6% | (many diffs) |
| 46 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | XM_006516501.3 | 74.4% | 80.5% | (many diffs) |
| 47 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | NM_001347470.1 | 71.6% | 77.5% | (many diffs) |
| 48 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | NM_001347471.1 | 71.6% | 77.5% | (many diffs) |
| 49 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | XM_006516496.3 | 71.6% | 77.5% | (many diffs) |
| 50 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | XM_006516497.2 | 71.6% | 77.5% | (many diffs) |
| 51 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | XM_006516498.2 | 71.6% | 77.5% | (many diffs) |
| 52 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | XM_006516500.2 | 71.6% | 77.5% | (many diffs) |
| 53 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | XM_006516491.3 | 70% | 75.7% | (many diffs) |
| 54 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | XM_006516492.2 | 70% | 75.7% | (many diffs) |
| 55 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | XM_006516493.2 | 70% | 75.7% | (many diffs) |
| 56 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | XM_006516494.3 | 70% | 75.7% | (many diffs) |
| 57 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | NM_001347472.1 | 69.4% | 76% | (many diffs) |
| 58 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | NM_001347473.1 | 69.4% | 76% | (many diffs) |
| 59 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | NM_144516.4 | 69.4% | 76% | (many diffs) |
| 60 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | NM_001347479.1 | 63.5% | 69.6% | (many diffs) |
| 61 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | NM_001347480.1 | 63.5% | 69.6% | (many diffs) |
| 62 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | XM_006516504.2 | 63.5% | 69.6% | (many diffs) |
| 63 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | XM_017315567.1 | 63.5% | 69.6% | (many diffs) |
| 64 | mouse | 66505 | Zmynd11 | zinc finger, MYND domain co... | XR_001780796.1 | 30.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1647
- ORF length:
- 1581
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgtc tcgagtccac ggtatgcacc ctaaagagac cacccgtcag ctgagcttag 121 ctgtgaaaga tggtcttatt gtcgaaactc taacagtggg ctgcaaaggt tcaaaagctg 181 gtattgaaca agaaggatat tggttgccag gagatgagat tgactgggaa acagaaaatc 241 atgactggta ttgttttgaa tgccatttgc ctggagaggt gttgatatgt gacctgtgtt 301 ttcgtgtgta tcattccaag tgtttgtctg atgagttcag gcttagagac agcagtagtc 361 cctggcagtg cccagtttgc aggagcatta agaagaagaa tacaaacaaa caggagatgg 421 gcacatacct cagattcatt gtctcccgca tgaaggagag ggctatagat cttaataaaa 481 aggggaagga caataaacac ccgatgtaca ggaggctggt gcactcagct gtggacgttc 541 ccaccattca agagaaagtg aatgaaggga aataccgaag ttatgaagag ttcaaagctg 601 atgcccaatt gcttctccac aataccgtga ttttctatgg agacagtgag caagctgaca 661 ttgcgaggat gctatataaa gacacatgtc atgagctgga tgaactgcag ctttgcaaga 721 attgctttta cttgtcaaat gctcgtcctg acaactggtt ctgttatcct tgtataccta 781 atcatgagct ggtttgggct aaaatgaaag gttttgggtt ttggccagcc aaagtcatgc 841 agaaagaaga caatcaagtc gacgttcgct tctttggcca ccaccaccag agggcctgga 901 ttccttctga aaacattcaa gatatcacag tcaacattca tcggctgcac gtgaagcgca 961 gtatgggttg gaaaaaggcc tgtgatgagc tggagctgca tcagcgtttc ctacgagaag 1021 ggagattttg gaaatctaag aatgaggacc gaggtgagga agaggcagaa tccagtatct 1081 cctccaccag taatgagcag ctaaaggtca ctcaagaacc aagagcaaag aaaggacgac 1141 gtaatcaaag tgtggagccc aaaaaggaag aaccagagcc tgaaacagaa gcagtaagtt 1201 ctagccagga aatacccacg atgcctcagc ccatcgaaaa agtctccgtg tcaacTCAGA 1261 CAAAGAAGTT AAGTGCCTCT TCACCAAGAA TGCTGCATCG GAGCACCCAG ACCACAAACG 1321 ACGGCGTGTG TCAGAGCATG TGCCATGACA AATACACCAA GATCTTCAAT GACTTCAAAG 1381 ACCGGATGAA GTCGGACCAC AAGCGGGAGA CAGAGCGTGT TGTCCGAGAA GCTCTGGAGA 1441 AGCTGCGTTC TGAAATGGAA GAAGAAAAGA GACAAGCTGT AAATAAAGCT GTAGCCAACA 1501 TGCAGGGTGA GATGGACAGA AAATGTAAGC AAGTAAAGGA AAAGTGTAAG GAAGAATTTG 1561 TAGAAGAAAT CAAGAAGCTG GCAACACAGC ACAAGCAACT GATTTCTCAG ACCAAGAAGA 1621 AGCAGTGGGT AAATACCAGT CTTTTTTACC CAACTTTCTT GTACAAAGTG GTTGATATCG 1681 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 1741 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GACACCGGTC 1801 CGCCGCCTTC CTTCTTACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 1861 aagatt