Construct: ORF TRCN0000479991

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009488.1_s317c1
Derived from:
ccsbBroadEn_12084
DNA Barcode:
GTTTCTTTAGCCCCGACTGTGCAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MBTD1 (54799)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479991
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54799 MBTD1 mbt domain containing 1 XM_011524933.2 77.2% 75.3% (many diffs)
2 human 54799 MBTD1 mbt domain containing 1 XM_017024782.1 77.2% 75.3% (many diffs)
3 human 54799 MBTD1 mbt domain containing 1 XM_011524931.2 73.4% 71.6% (many diffs)
4 human 54799 MBTD1 mbt domain containing 1 NM_017643.3 64.6% 63.3% (many diffs)
5 human 54799 MBTD1 mbt domain containing 1 XM_005257468.5 62.4% 61.1% (many diffs)
6 human 54799 MBTD1 mbt domain containing 1 XM_005257467.5 62.2% 60.9% (many diffs)
7 human 54799 MBTD1 mbt domain containing 1 XM_011524929.2 58.9% 57.5% (many diffs)
8 human 54799 MBTD1 mbt domain containing 1 XM_011524930.1 58.9% 57.5% (many diffs)
9 human 54799 MBTD1 mbt domain containing 1 XM_011524925.1 58.7% 57.3% (many diffs)
10 human 54799 MBTD1 mbt domain containing 1 XM_011524926.3 58.7% 57.3% (many diffs)
11 human 54799 MBTD1 mbt domain containing 1 XM_011524928.2 58.7% 57.3% (many diffs)
12 human 54799 MBTD1 mbt domain containing 1 XM_011524924.2 57% 55.7% (many diffs)
13 human 54799 MBTD1 mbt domain containing 1 XM_011524923.2 56.9% 55.6% (many diffs)
14 human 54799 MBTD1 mbt domain containing 1 XM_011524922.2 56.8% 55.5% (many diffs)
15 human 54799 MBTD1 mbt domain containing 1 XR_934491.2 56.3% 1_782del;2013_2183del
16 human 54799 MBTD1 mbt domain containing 1 XR_001752546.1 52.6% (many diffs)
17 human 54799 MBTD1 mbt domain containing 1 XR_934492.2 52.5% 1_782del;1660_1661ins83;1930_2100del
18 human 54799 MBTD1 mbt domain containing 1 XR_001752545.1 49.3% (many diffs)
19 human 54799 MBTD1 mbt domain containing 1 XM_011524936.1 46.3% 43.7% 1_492del;1222_1223ins148;1290_1291ins284
20 human 54799 MBTD1 mbt domain containing 1 XM_011524935.3 44.5% 42% 1_561del;1291_1292ins148;1359_1360ins284
21 human 54799 MBTD1 mbt domain containing 1 XM_011524934.2 44.4% 41.9% 1_567del;1297_1298ins148;1365_1366ins284
22 mouse 103537 Mbtd1 mbt domain containing 1 XM_017314204.1 82.3% 84.7% (many diffs)
23 mouse 103537 Mbtd1 mbt domain containing 1 XM_017314205.1 82.3% 84.7% (many diffs)
24 mouse 103537 Mbtd1 mbt domain containing 1 XM_017314206.1 82.3% 84.7% (many diffs)
25 mouse 103537 Mbtd1 mbt domain containing 1 XM_006531912.3 72.6% 74.5% (many diffs)
26 mouse 103537 Mbtd1 mbt domain containing 1 XM_017314203.1 72.6% 74.5% (many diffs)
27 mouse 103537 Mbtd1 mbt domain containing 1 NM_001346525.1 61.4% 63.3% (many diffs)
28 mouse 103537 Mbtd1 mbt domain containing 1 NM_134012.3 60.5% 62.4% (many diffs)
29 mouse 103537 Mbtd1 mbt domain containing 1 XM_006531910.3 60.5% 62.4% (many diffs)
30 mouse 103537 Mbtd1 mbt domain containing 1 XM_017314202.1 59.8% 61.6% (many diffs)
31 mouse 103537 Mbtd1 mbt domain containing 1 XM_006531909.3 59.6% 61.4% (many diffs)
32 mouse 103537 Mbtd1 mbt domain containing 1 XM_006531908.3 57% 58.8% (many diffs)
33 mouse 103537 Mbtd1 mbt domain containing 1 XM_006531907.3 56.8% 58.6% (many diffs)
34 mouse 103537 Mbtd1 mbt domain containing 1 XM_006531904.3 55.1% 56.7% (many diffs)
35 mouse 103537 Mbtd1 mbt domain containing 1 XM_006531905.3 55.1% 56.7% (many diffs)
36 mouse 103537 Mbtd1 mbt domain containing 1 XM_006531906.2 55.1% 56.7% (many diffs)
37 mouse 103537 Mbtd1 mbt domain containing 1 XM_006531894.3 54.9% 56.5% (many diffs)
38 mouse 103537 Mbtd1 mbt domain containing 1 XM_006531895.2 54.9% 56.5% (many diffs)
39 mouse 103537 Mbtd1 mbt domain containing 1 XM_006531897.3 54.9% 56.5% (many diffs)
40 mouse 103537 Mbtd1 mbt domain containing 1 XM_006531898.2 54.9% 56.5% (many diffs)
41 mouse 103537 Mbtd1 mbt domain containing 1 XM_006531899.3 54.9% 56.5% (many diffs)
42 mouse 103537 Mbtd1 mbt domain containing 1 XM_006531900.3 54.9% 56.5% (many diffs)
43 mouse 103537 Mbtd1 mbt domain containing 1 XM_006531901.3 54.9% 56.5% (many diffs)
44 mouse 103537 Mbtd1 mbt domain containing 1 XM_006531902.2 54.9% 56.5% (many diffs)
45 mouse 103537 Mbtd1 mbt domain containing 1 XM_006531903.3 54.9% 56.5% (many diffs)
46 mouse 103537 Mbtd1 mbt domain containing 1 XM_017314200.1 54.9% 56.5% (many diffs)
47 mouse 103537 Mbtd1 mbt domain containing 1 XM_017314201.1 54.9% 56.5% (many diffs)
48 mouse 103537 Mbtd1 mbt domain containing 1 XM_006531893.3 54.3% 55.9% (many diffs)
49 mouse 103537 Mbtd1 mbt domain containing 1 XM_006531891.3 53.3% 54.9% (many diffs)
50 mouse 103537 Mbtd1 mbt domain containing 1 XM_006531887.3 53.3% 54.8% (many diffs)
51 mouse 103537 Mbtd1 mbt domain containing 1 XM_006531889.2 53.3% 54.8% (many diffs)
52 mouse 103537 Mbtd1 mbt domain containing 1 XM_006531885.3 52.2% 53.7% (many diffs)
53 mouse 103537 Mbtd1 mbt domain containing 1 XM_006531884.3 52% 53.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1299
ORF length:
1230
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggggacctgc tggggtgata tctcagaaaa tgtgagagta gaagttccca
121atacagactg cagcctacct accaaagtct tctggattgc tggaattgta aaattagcag
181gttacaatgc ccttttaaga tatgaaggat ttgaaaatga ctctggtctg gacttctggt
241gcaatatatg tggttctgat atccatccag ttggttggtg tgcagccagc ggaaaacctc
301ttgttcctcc tagaactatt cagcataaat atacaaactg gaaagctttt ctagtgaaac
361gacttactgg tgccaaaaca ctgcctcctg atttctccca aaaggtttca gagagtatgc
421agtatccttt caaaccttgc atgagagtag aagtggttga caagaggcat ttgtgtcgaa
481cacgagtagc agtggtggaa agtgtaattg gaggaagatt aagactagtg tatgaagaaa
541gcgaagatag aacagatgac ttctggtgcc atatgcacag cccattaata catcatattg
601gttggtctcg aagcataggt catcgattca aaagatctga tattacaaag aaacaggatg
661gacattttga tacaccacca catttatttg ctaaggtaaa agaagtagac cagagtgggg
721aatggttcaa ggaaggaatg aaattggaag ctatagaccc attaaatctt tctacaatat
781gtgtcgcaac cattagaaag gtgctagctg acggattcct gatgattggg atcgatggct
841cagaagcagc agacggatct gactggttct gttaccatgc aacctctcct tctattttcc
901ctgtcggttt ctgtgaaatt aacatgattg aacttactcc acccagaggt tacacaaaac
961ttccttttaa atggtttgac taccTCAGGG AAACTGGCTC CATTGCAGCA CCAGTAAAAC
1021TATTTAATAA GGATGTTCCA AATCACGGAT TTCGTGTAGG AATGAAATTA GAAGCAGTAG
1081ATCTCATGGA GCCACGTTTA ATATGTGTAG CCACAGTAAC TCGAATTATT CATCGTCTCT
1141TGAGGATACA TTTTGATGGA TGGGAAGAAG AGTATGATCA GTGGGTAGAC TGTGAGTCAC
1201CTGACCTCTA TCCTGTAGGG TGGTGTCAGT TAACTGGATA TCAACTACAG CCTCCAGCAT
1261CACAGTGTAA GTTGGTATAC AGAAAAGGTG TCCTTTTGTT GCCAACTTTC TTGTACAAAG
1321TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
1381GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
1441ACGAGTTTCT TTAGCCCCGA CTGTGCAGAC GCGTTAAGTC gacaatcaac ctctggatta
1501caaaatttgt gaaagatt

Download FASTA (ORF) (Full)