Construct: ORF TRCN0000480532

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012757.1_s317c1
Derived from:
ccsbBroadEn_08451
DNA Barcode:
TAGCATGTCAGCTTCCGAGAGTTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM118A (55007)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480532
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55007 FAM118A family with sequence simila... NM_001104595.2 99.7% 99.4% 385G>C;420G>A;716G>A
2 human 55007 FAM118A family with sequence simila... NM_001349913.1 99.7% 99.4% 385G>C;420G>A;716G>A
3 human 55007 FAM118A family with sequence simila... NM_017911.4 99.7% 99.4% 385G>C;420G>A;716G>A
4 human 55007 FAM118A family with sequence simila... NM_001349914.1 99.4% 99.1% (many diffs)
5 human 55007 FAM118A family with sequence simila... NM_001349916.1 95.9% 95.6% (many diffs)
6 human 55007 FAM118A family with sequence simila... NM_001349915.1 79.1% 78.9% 300_301ins222;494G>A
7 human 55007 FAM118A family with sequence simila... XM_017028843.1 76.1% 76% 1_42del;342_343ins222;536G>A
8 human 55007 FAM118A family with sequence simila... XM_017028842.1 75.9% 75.8% (many diffs)
9 human 55007 FAM118A family with sequence simila... XM_017028844.1 73% 72.8% (many diffs)
10 human 55007 FAM118A family with sequence simila... XM_017028850.1 59.6% 59.5% (many diffs)
11 human 55007 FAM118A family with sequence simila... XM_017028851.1 59.6% 59.5% (many diffs)
12 human 55007 FAM118A family with sequence simila... XM_017028852.1 59.6% 59.5% (many diffs)
13 human 55007 FAM118A family with sequence simila... XM_017028846.1 59.5% 59.4% (many diffs)
14 human 55007 FAM118A family with sequence simila... XM_017028847.2 59.5% 59.4% (many diffs)
15 human 55007 FAM118A family with sequence simila... XM_017028848.1 59.5% 59.4% (many diffs)
16 human 55007 FAM118A family with sequence simila... XM_017028849.1 59.5% 59.4% (many diffs)
17 human 55007 FAM118A family with sequence simila... XM_017028858.1 58.1% 50.5% (many diffs)
18 human 55007 FAM118A family with sequence simila... XM_017028857.1 58% 50.4% (many diffs)
19 human 55007 FAM118A family with sequence simila... XM_017028841.1 57.8% 57.6% (many diffs)
20 human 55007 FAM118A family with sequence simila... XM_011530247.3 57.6% 57.5% (many diffs)
21 human 55007 FAM118A family with sequence simila... XM_017028845.1 57.6% 57.5% (many diffs)
22 human 55007 FAM118A family with sequence simila... XM_024452254.1 56% 48.6% (many diffs)
23 human 55007 FAM118A family with sequence simila... XM_011530256.1 55.8% 48.5% (many diffs)
24 human 55007 FAM118A family with sequence simila... XM_024452255.1 54.6% 47.9% (many diffs)
25 human 55007 FAM118A family with sequence simila... XM_017028861.1 54.2% 54% 0_1ins489;227G>A
26 human 55007 FAM118A family with sequence simila... XR_001755254.1 42.5% (many diffs)
27 human 55007 FAM118A family with sequence simila... XM_011530254.3 40.9% 40.2% (many diffs)
28 human 55007 FAM118A family with sequence simila... XM_024452256.1 39.2% 38.2% (many diffs)
29 human 55007 FAM118A family with sequence simila... XM_024452257.1 39.2% 38.2% (many diffs)
30 human 55007 FAM118A family with sequence simila... XR_001755255.1 28.7% (many diffs)
31 human 55007 FAM118A family with sequence simila... XM_017028856.2 28.6% 23.9% (many diffs)
32 human 55007 FAM118A family with sequence simila... XR_002958707.1 28.6% (many diffs)
33 human 55007 FAM118A family with sequence simila... XR_001755256.1 27.6% (many diffs)
34 human 55007 FAM118A family with sequence simila... NR_146323.1 27.5% (many diffs)
35 human 55007 FAM118A family with sequence simila... XR_002958708.1 23.1% (many diffs)
36 human 55007 FAM118A family with sequence simila... XR_002958705.1 19.8% (many diffs)
37 human 55007 FAM118A family with sequence simila... XR_002958706.1 19.2% (many diffs)
38 human 55007 FAM118A family with sequence simila... XR_002958709.1 19.1% (many diffs)
39 mouse 73225 Fam118a family with sequence simila... NM_133750.4 86.7% 91.8% (many diffs)
40 mouse 73225 Fam118a family with sequence simila... XM_006521483.2 86.7% 91.8% (many diffs)
41 mouse 73225 Fam118a family with sequence simila... XM_017316757.1 86.5% 91.6% (many diffs)
42 mouse 73225 Fam118a family with sequence simila... XM_006521482.3 85% 90.1% (many diffs)
43 mouse 73225 Fam118a family with sequence simila... XM_006521481.3 84.8% 89.8% (many diffs)
44 mouse 73225 Fam118a family with sequence simila... XM_006521478.3 83.4% 88% (many diffs)
45 mouse 73225 Fam118a family with sequence simila... XM_006521479.3 83.4% 88% (many diffs)
46 mouse 73225 Fam118a family with sequence simila... XM_006521480.3 83.4% 88% (many diffs)
47 mouse 73225 Fam118a family with sequence simila... XM_011245743.2 82.1% 86.5% (many diffs)
48 mouse 73225 Fam118a family with sequence simila... XM_006521474.3 81.9% 86.4% (many diffs)
49 mouse 73225 Fam118a family with sequence simila... XM_006521475.3 81.9% 86.4% (many diffs)
50 mouse 73225 Fam118a family with sequence simila... XM_006521476.3 81.9% 86.4% (many diffs)
51 mouse 73225 Fam118a family with sequence simila... XR_001781571.1 33.2% (many diffs)
52 mouse 73225 Fam118a family with sequence simila... XR_384052.3 32% (many diffs)
53 mouse 73225 Fam118a family with sequence simila... XR_001781570.1 31% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1137
ORF length:
1071
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga ttcagtggaa aagacaacaa atagaagtga acaaaaatcc agaaagtttt
121taaaaagcct catccggaaa cagccccagg aactgctcct ggttatcggg actggcgtca
181gcgcagcagt ggcccccgga atccctgccc tttgctcgtg gagaagctgc atcgaggccg
241tcatcgaggc tgcagagcag ctggaggtgc tgcaccccgg agacgtcgcc gagttccgga
301ggaaagtgac aaaggaccgg gacctgttgg ttgtcgccca tgatctgatc cggaagatgt
361cacctcgcac aggcgatgcc aagcccagct tcttccagga ctgcctgatg gaggtgtttg
421acgacctgga gcagcacatc cggagtcctc tggtgctgca gtcgatcctc agcctgatgg
481acagaggcgc catggtcctg accaccaact atgacaacct gctggaggcc tttggccggc
541ggcagaacaa gcccatggag tccctggact tgaaggacaa gaccaaggtc cttgaatggg
601caagagggca catgaagtac ggcgtcctcc acattcacgg cctctacacg gacccctgcg
661gggtggtgct ggacccatcg gggtataaag acgtcactca agacgcagaa gtcatggaag
721TCCTCCAGAA CTTATACCGC ACCAAGTCCT TTCTGTTTGT GGGCTGTGGG GAGACCCTTC
781ATGATCAGAT ATTCCAGGCC CTCTTTCTTT ACTCCGTGCC GAATAAGGTG GATTTGGAGC
841ACTACATGCT TGTGCTGAAG GAGAATGAAG ACCATTTCTT TAAGCATCAG GCAGATATGC
901TTCTGCACGG AATCAAAGTT GTATCCTACG GGGACTGTTT TGACCACTTT CCAGGATATG
961TGCAAGACCT TGCCACTCAG ATCTGCAAAC AGCAAAGCCC AGATGCTGAT CGCGTGGACA
1021GCACCACATT ATTGGGTAAT GCATGCCAGG ACTGTGCAAA GAGGAAGTTA GAAGAGAATG
1081GAATTGAAGT TTCAAAAAAA CGCACACAAT CAGATACTGA TGATGCTGGA GGGTCTTGCC
1141CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1201TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1261ATATATCTTG TGGAAAGGAC GATAGCATGT CAGCTTCCGA GAGTTTACGC GTTAAGTCga
1321caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)