Construct: ORF TRCN0000480852
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008471.1_s317c1
- Derived from:
- ccsbBroadEn_09311
- DNA Barcode:
- CCGCTCGGTCCTACGGAGCGTTCA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GGTLC2 (91227)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480852
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 91227 | GGTLC2 | gamma-glutamyltransferase l... | NM_199127.2 | 99.8% | 99.5% | 209A>G |
| 2 | human | 91227 | GGTLC2 | gamma-glutamyltransferase l... | XM_024452301.1 | 99.8% | 99.5% | 209A>G |
| 3 | human | 728226 | GGTLC3 | gamma-glutamyltransferase l... | NM_001355479.1 | 91.1% | 84.8% | (many diffs) |
| 4 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_011530621.2 | 91.1% | 84.4% | (many diffs) |
| 5 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_017029185.1 | 91.1% | 84.4% | (many diffs) |
| 6 | human | 92086 | GGTLC1 | gamma-glutamyltransferase l... | NM_178311.3 | 90.8% | 87.5% | (many diffs) |
| 7 | human | 92086 | GGTLC1 | gamma-glutamyltransferase l... | NM_178312.3 | 90.8% | 87.5% | (many diffs) |
| 8 | human | 92086 | GGTLC1 | gamma-glutamyltransferase l... | XM_005260865.4 | 90.8% | 87.5% | (many diffs) |
| 9 | human | 92086 | GGTLC1 | gamma-glutamyltransferase l... | XM_017028126.2 | 90.8% | 87.5% | (many diffs) |
| 10 | human | 91227 | GGTLC2 | gamma-glutamyltransferase l... | XM_005261818.2 | 90.3% | 90% | 1_69del;278A>G |
| 11 | human | 91227 | GGTLC2 | gamma-glutamyltransferase l... | NM_001282879.1 | 86.3% | 86.1% | 209A>G;358_459del |
| 12 | human | 91227 | GGTLC2 | gamma-glutamyltransferase l... | XM_005261817.3 | 86.3% | 86.1% | 209A>G;358_459del |
| 13 | human | 91227 | GGTLC2 | gamma-glutamyltransferase l... | XM_011530497.1 | 86.3% | 86.1% | 209A>G;358_459del |
| 14 | human | 728226 | GGTLC3 | gamma-glutamyltransferase l... | XM_024452264.1 | 83.6% | 80.1% | (many diffs) |
| 15 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_006724929.2 | 83.6% | 79.7% | (many diffs) |
| 16 | human | 92086 | GGTLC1 | gamma-glutamyltransferase l... | XM_005260863.4 | 83.5% | 82.1% | (many diffs) |
| 17 | human | 92086 | GGTLC1 | gamma-glutamyltransferase l... | XM_005260864.4 | 83.5% | 82.1% | (many diffs) |
| 18 | human | 92086 | GGTLC1 | gamma-glutamyltransferase l... | XM_011529391.3 | 83.5% | 82.1% | (many diffs) |
| 19 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_006724396.2 | 83.4% | 79.3% | (many diffs) |
| 20 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_017029184.1 | 83.4% | 79.3% | (many diffs) |
| 21 | human | 91227 | GGTLC2 | gamma-glutamyltransferase l... | XM_005261815.3 | 79.1% | 78.9% | 1_69del;278A>G;427_528del |
| 22 | human | 92086 | GGTLC1 | gamma-glutamyltransferase l... | XM_011529392.2 | 77.9% | 74.6% | (many diffs) |
| 23 | human | 92086 | GGTLC1 | gamma-glutamyltransferase l... | XM_011529393.2 | 77.9% | 74.6% | (many diffs) |
| 24 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_006724928.3 | 65.6% | 62.6% | (many diffs) |
| 25 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_005261890.4 | 65.5% | 62.3% | (many diffs) |
| 26 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_017029183.1 | 65.5% | 62.3% | (many diffs) |
| 27 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_017030145.2 | 56.8% | 54.1% | (many diffs) |
| 28 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_006724395.4 | 52.2% | 49.6% | (many diffs) |
| 29 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_017029182.2 | 49.9% | 46.1% | (many diffs) |
| 30 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_006724924.4 | 48% | 45.7% | (many diffs) |
| 31 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_017030144.1 | 48% | 45.7% | (many diffs) |
| 32 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_006724392.3 | 47.9% | 45.5% | (many diffs) |
| 33 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_017029179.2 | 47.9% | 45.5% | (many diffs) |
| 34 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_017029180.1 | 47.9% | 45.5% | (many diffs) |
| 35 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_017029181.2 | 47.9% | 45.5% | (many diffs) |
| 36 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_017030143.2 | 42% | 38.7% | (many diffs) |
| 37 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_006724921.4 | 40.7% | 38.8% | (many diffs) |
| 38 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_017030136.2 | 40.7% | 38.8% | (many diffs) |
| 39 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_017030137.2 | 40.7% | 38.8% | (many diffs) |
| 40 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_017030140.2 | 40.7% | 38.8% | (many diffs) |
| 41 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_017030141.2 | 40.7% | 38.8% | (many diffs) |
| 42 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_017030142.2 | 40.7% | 38.8% | (many diffs) |
| 43 | human | 2678 | GGT1 | gamma-glutamyltransferase 1 | NM_001288833.2 | 37.1% | 35.8% | (many diffs) |
| 44 | human | 2678 | GGT1 | gamma-glutamyltransferase 1 | NM_013421.3 | 37.1% | 35.8% | (many diffs) |
| 45 | human | 2678 | GGT1 | gamma-glutamyltransferase 1 | NM_013430.2 | 37.1% | 35.8% | (many diffs) |
| 46 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_011546256.3 | 36.2% | 33.3% | (many diffs) |
| 47 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | NM_001351304.1 | 35.9% | 33.1% | (many diffs) |
| 48 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_017029186.2 | 35.9% | 33.1% | (many diffs) |
| 49 | human | 2679 | GGT3P | gamma-glutamyltransferase 3... | NR_003267.1 | 30.4% | (many diffs) | |
| 50 | human | 102724823 | LOC102724823 | inactive glutathione hydrol... | XR_002958856.1 | 16.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 720
- ORF length:
- 654
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgac ctctgagttc ttcgctgccc agctccgggc ccagatctct gacgacacca 121 ctcacccgat ctcctactac aagcccgagt tctacacgcc ggttgatggg ggcactgctc 181 acctgtctgt cgtcgcagag gacggcagtg ctgtgtccgc caccagcacc atcaacctct 241 actttggctc caaggtccgc tccccggtca gcgggatcct gttcaatgat gaaatggatg 301 acttcagctc tcccaacatc accaacgagt ttGGGGTGCC CCCCTCACCT GCCAATTTCA 361 TCCAGCCAGG GAAGCAGCCG CTCTCGTCAA TGTGCCCGAC GATCATGGTG GGCCAGGACG 421 GCCAGCCCCC AAGCCATGCT GATCACACTC CCATGCCCCA GGCCATCATC TACAACCTCT 481 GGTTCGGCTA TGACGTGAAG CGGGCCGTGG AGGAGCCCCG GCTGCACAAC CAGCTTCTGC 541 CCAACGTCAC GACAGTGGAG AGAAACATTG ACCAGGCAGT GACTGCAGCC CTGGAGACCC 601 GGCACCATCA CACCCAGATC GCGTCCACCT TCATCGCTGT GGTGCAAGCC ATCGTCCGCA 661 CGGCTGGTGG CTGGGCAGCT GCCTCGGACT CCAGGAAAGG CGGGGAGCCT GCCGGCTACT 721 GCCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG 781 GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAATTGAA GTATTTCGAT TTCTTGGCTT 841 TATATATCTT GTGGAAAGGA CGACCGCTCG GTCCTACGGA GCGTTCAACG CGTTAAGTCg 901 acaatcaacc tctggattac aaaatttgtg aaagatt