Construct: ORF TRCN0000480940

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006784.1_s317c1
Derived from:
ccsbBroadEn_08409
DNA Barcode:
CATGTGCACTTAGTAGCCCGGATT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CNNM2 (54805)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480940
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54805 CNNM2 cyclin and CBS domain dival... NM_199077.2 99.9% 99.8% 233G>T
2 human 54805 CNNM2 cyclin and CBS domain dival... XM_006717908.2 97.6% 96.4% (many diffs)
3 human 54805 CNNM2 cyclin and CBS domain dival... XM_005269933.4 96.7% 95.9% (many diffs)
4 human 54805 CNNM2 cyclin and CBS domain dival... XM_011539911.3 96.7% 95.9% (many diffs)
5 human 54805 CNNM2 cyclin and CBS domain dival... XR_001747120.1 66.5% (many diffs)
6 human 54805 CNNM2 cyclin and CBS domain dival... NM_199076.3 64.1% 62.7% (many diffs)
7 human 54805 CNNM2 cyclin and CBS domain dival... NM_017649.5 62.5% 61.1% (many diffs)
8 human 54805 CNNM2 cyclin and CBS domain dival... XR_945782.3 55.4% (many diffs)
9 human 54805 CNNM2 cyclin and CBS domain dival... XR_001747119.2 45.5% (many diffs)
10 human 54805 CNNM2 cyclin and CBS domain dival... XR_001747121.1 12.7% (many diffs)
11 human 54805 CNNM2 cyclin and CBS domain dival... XR_001747118.1 12.7% (many diffs)
12 mouse 94219 Cnnm2 cyclin M2 XM_006527490.3 91.1% 95.8% (many diffs)
13 mouse 94219 Cnnm2 cyclin M2 XM_006527489.3 80% 82% (many diffs)
14 mouse 94219 Cnnm2 cyclin M2 NM_001102471.1 59.7% 61.4% (many diffs)
15 mouse 94219 Cnnm2 cyclin M2 NM_033569.3 58.2% 59.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1725
ORF length:
1656
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gattggctgt ggcgcttgtg aacccaaagt aaagatggcg ggcgggcagg
121cagccgccgc actgcccact tggaagatgg cggcgcgccg cagcctcagc gctcgcggcc
181gggggatcct gcaggcggct gcggggcggc tgctgccgct gctcctgctg agctgctgct
241gcggtgcggg cggctgcgca gcggtgggcg agaatgagga gacggtgatc atcgggctgc
301tactggagga cacgaacgac gtgtcgttca tggaaggggg ggcgctgcgg gtgagcgaac
361ggacccgggt caagctgcgg gtgtacgggc agaacatcaa taacgagacg tggtcccgca
421tcgccttcac cgagcacgag cggcggcgcc acagcccggg ggagcgcggg ctggggggcc
481ccgcgccgcc agagccggac agcggccccc agcgatgcgg catccgcacc tcagacatca
541tcatcttgcc ccacatcatt ctcaaccgcc gcacctcggg catcatcgag atcgagatca
601aaccgctacg caagatggag aagagcaagt cctattacct gtgcacgtcg ctctccacgc
661ccgccctggg cgccggcggc tcggggtcca cgggtggcgc cgtcgggggc aagggtggct
721cgggggtggc cgggctcccg ccgcccccgt gggccgagac cacctggatt taccacgacg
781gcgaggacac caagatgatc gtaggcgaag agaagaagtt cctgctgccc ttctggctgc
841aggtgatctt catttcgctg ctgctgtgcc tgtcgggcat gttcagcggc ctcaacctgg
901ggctcatggc cctggacccg atggagctgc gcatcgtgca gaactgcggc acggagaagg
961agaagaatta cgccaagcgc atcgagccgg tgcgcaggca gggcaactac ctgctgtgct
1021cactgctgct gggcaacgtg ctggtcaaca ccacgctcac catcctgctc gacgacatcg
1081ccggctcggg cctcgtggcc gtggtagtct ccaccatcgg tatcgtcatc ttcggagaga
1141tcgtgcccca ggccatctgc tcccggcatg gcctggctgt gggggccaac accatcttcc
1201tcaccaagtt tttcatgatg atgaccttcc ccgcttccta cccggtcagc aagctgctgg
1261actgcgtcct gggccaggag ataggcaccg tctataaccg ggaaaaactg ctggagatgc
1321TCCGGGTCAC CGATCCCTAC AACGACCTCG TTAAGGAGGA GCTGAACATC ATCCAAGGGG
1381CGCTGGAGCT CCGCACCAAG ACGGTGGAGG ACGTGATGAC CCCACTCCGG GACTGCTTCA
1441TGATCACCGG CGAAGCCATC CTGGACTTCA ACACCATGTC TGAGATCATG GAGAGCGGCT
1501ACACCCGCAT TCCAGTGTTT GAAGGGGAGC GCTCCAATAT CGTGGACCTG CTGTTTGTCA
1561AAGACTTGGC CTTCGTGGAT CCCGATGACT GTACCCCCCT GAAAACCATC ACCAAATTTT
1621ATAACCACCC CTTGCACTTT GTTTTCAATG ACACCAAGTT GGACGCTATG CTGGAAGAAT
1681TTAAGAAAGA ACACACAAAC AAGAAACCCA AATCATACCA ACACTTGCCA ACTTTCTTGT
1741ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
1801AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
1861GAAAGGACGA CATGTGCACT TAGTAGCCCG GATTACGCGT TAAGTCgaca atcaacctct
1921ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)