Construct: ORF TRCN0000488063

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019635.1_s317c1
DNA Barcode:
CTCACTGTCGAGCAACCATACTGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NTRK2 (4915)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488063
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4915 NTRK2 neurotrophic receptor tyros... NM_001018064.3 100% 100%
2 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369532.1 100% 100%
3 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369533.1 100% 100%
4 human 4915 NTRK2 neurotrophic receptor tyros... XM_011518718.3 100% 100%
5 human 4915 NTRK2 neurotrophic receptor tyros... XM_017014752.1 100% 100%
6 human 4915 NTRK2 neurotrophic receptor tyros... XM_017014753.2 100% 100%
7 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369534.1 98.5% 98.5% 1158_1159ins36
8 human 4915 NTRK2 neurotrophic receptor tyros... NM_006180.4 98% 98% 1396_1443del
9 human 4915 NTRK2 neurotrophic receptor tyros... XM_005252001.3 98% 98% 1396_1443del
10 human 4915 NTRK2 neurotrophic receptor tyros... XM_005252003.3 98% 98% 1396_1443del
11 human 4915 NTRK2 neurotrophic receptor tyros... XM_005252004.2 98% 98% 1396_1443del
12 human 4915 NTRK2 neurotrophic receptor tyros... XM_017014751.2 98% 98% 1396_1443del
13 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369535.1 81% 81% 0_1ins468
14 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369536.1 79.4% 79.4% 0_1ins468;928_975del
15 human 4915 NTRK2 neurotrophic receptor tyros... NM_001018066.3 64.5% 64.2% (many diffs)
16 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369538.1 64.5% 64.2% (many diffs)
17 human 4915 NTRK2 neurotrophic receptor tyros... XM_011518720.3 64.5% 64.2% (many diffs)
18 human 4915 NTRK2 neurotrophic receptor tyros... NM_001018065.2 63.2% 63% (many diffs)
19 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369537.1 63.2% 63% (many diffs)
20 human 4915 NTRK2 neurotrophic receptor tyros... XM_005252006.4 63.2% 63% (many diffs)
21 human 4915 NTRK2 neurotrophic receptor tyros... XM_017014755.1 63.2% 63% (many diffs)
22 human 4915 NTRK2 neurotrophic receptor tyros... NM_001007097.3 57.2% 56.3% (many diffs)
23 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369539.1 57.2% 56.3% (many diffs)
24 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369540.1 57.2% 56.3% (many diffs)
25 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369541.1 57.2% 56.3% (many diffs)
26 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369542.1 57.2% 56.3% (many diffs)
27 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369543.1 57.2% 56.3% (many diffs)
28 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369544.1 57.2% 56.3% (many diffs)
29 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369545.1 57.2% 56.3% (many diffs)
30 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369548.1 57.2% 56.3% (many diffs)
31 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369549.1 57.2% 56.3% (many diffs)
32 human 4915 NTRK2 neurotrophic receptor tyros... XM_017014760.2 57.2% 56.3% (many diffs)
33 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369547.1 56.9% 56.5% (many diffs)
34 human 4915 NTRK2 neurotrophic receptor tyros... NM_001291937.1 55.7% 54.6% (many diffs)
35 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369546.1 55.7% 54.6% (many diffs)
36 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369550.1 38.3% 37.5% (many diffs)
37 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369551.1 38.3% 37.5% (many diffs)
38 human 4915 NTRK2 neurotrophic receptor tyros... NM_001369552.1 38.3% 37.5% (many diffs)
39 mouse 18212 Ntrk2 neurotrophic tyrosine kinas... NM_001025074.2 87.5% 93.9% (many diffs)
40 mouse 18212 Ntrk2 neurotrophic tyrosine kinas... NM_001282961.1 87.5% 93.9% (many diffs)
41 mouse 18212 Ntrk2 neurotrophic tyrosine kinas... XM_006517149.3 87.5% 93.9% (many diffs)
42 mouse 18212 Ntrk2 neurotrophic tyrosine kinas... XM_017315419.1 87.5% 93.9% (many diffs)
43 mouse 18212 Ntrk2 neurotrophic tyrosine kinas... XM_006517150.3 56.3% 58.3% (many diffs)
44 mouse 18212 Ntrk2 neurotrophic tyrosine kinas... XM_006517151.3 51.3% 51% (many diffs)
45 mouse 18212 Ntrk2 neurotrophic tyrosine kinas... NM_008745.3 49.7% 50.5% (many diffs)
46 mouse 18212 Ntrk2 neurotrophic tyrosine kinas... XM_006517152.3 49.7% 50.5% (many diffs)
47 mouse 18212 Ntrk2 neurotrophic tyrosine kinas... XM_017315420.1 49.7% 50.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
102
ORF end:
2568
ORF length:
2466
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggctccgc ggccgccccc ttcaccgaat tcctgctagg gatgtcgtcc tggataaggt
121ggcatggacc cgccatggcg cggctctggg gcttctgctg gctggttgtg ggcttctgga
181gggccgcttt cgcctgtccc acgtcctgca aatgcagtgc ctctcggatc tggtgcagcg
241acccttctcc tggcatcgtg gcatttccga gattggagcc taacagtgta gatcctgaga
301acatcaccga aattttcatc gcaaaccaga aaaggttaga aatcatcaac gaagatgatg
361ttgaagctta tgtgggactg agaaatctga caattgtgga ttctggatta aaatttgtgg
421ctcataaagc atttctgaaa aacagcaacc tgcagcacat caattttacc cgaaacaaac
481tgacgagttt gtctaggaaa catttccgtc accttgactt gtctgaactg atcctggtgg
541gcaatccatt tacatgctcc tgtgacatta tgtggatcaa gactctccaa gaggctaaat
601ccagtccaga cactcaggat ttgtactgcc tgaatgaaag cagcaagaat attcccctgg
661caaacctgca gatacccaat tgtggtttgc catctgcaaa tctggccgca cctaacctca
721ctgtggagga aggaaagtct atcacattat cctgtagtgt ggcaggtgat ccggttccta
781atatgtattg ggatgttggt aacctggttt ccaaacatat gaatgaaaca agccacacac
841agggctcctt aaggataact aacatttcat ccgatgacag tgggaagcag atctcttgtg
901tggcggaaaa tcttgtagga gaagatcaag attctgtcaa cctcactgtg cattttgcac
961caactatcac atttctcgaa tctccaacct cagaccacca ctggtgcatt ccattcactg
1021tgaaaggcaa ccccaaacca gcgcttcagt ggttctataa cggggcaata ttgaatgagt
1081ccaaatacat ctgtactaaa atacatgtta ccaatcacac ggagtaccac ggctgcctcc
1141agctggataa tcccactcac atgaacaatg gggactacac tctaatagcc aagaatgagt
1201atgggaagga tgagaaacag atttctgctc acttcatggg ctggcctgga attgacgatg
1261gtgcaaaccc aaattatcct gatgtaattt atgaagatta tggaactgca gcgaatgaca
1321tcggggacac cacgaacaga agtaatgaaa tcccttccac agacgtcact gataaaaccg
1381gtcgggaaca tctctcggtc tatgctgtgg tggtgattgc gtctgtggtg ggattttgcc
1441ttttggtaat gctgtttctg cttaagttgg caagacactc caagtttggc atgaaaggcc
1501cagcctccgt tatcagcaat gatgatgact ctgccagccc actccatcac atctccaatg
1561ggagtaacac tccatcttct tcggaaggtg gcccagatgc tgtcattatt ggaatgacca
1621agatccctgt cattgaaaat ccccagtact ttggcatcac caacagtcag ctcaagccag
1681acacatttgt tcagcacatc aagcgacata acattgttct gaaaagggag ctaggcgaag
1741gagcctttgg aaaagtgttc ctagctgaat gctataacct ctgtcctgag caggacaaga
1801tcttggtggc agtgaagacc ctgaaggatg ccagtgacaa tgcacgcaag gacttccacc
1861gtgaggccga gctcctgacc aacctccagc atgagcacat cgtcaagttc tatggcgtct
1921gcgtggaggg cgaccccctc atcatggtct ttgagtacat gaagcatggg gacctcaaca
1981agttcctcag ggcacacggc cctgatgccg tgctgatggc tgagggcaac ccgcccacgg
2041aactgacgca gtcgcagatg ctgcatatag cccagcagat cgccgcgggc atggtctacc
2101tggcgtccca gcacttcgtg caccgcgatt tggccaccag gaactgcctg gtcggggaga
2161acttgctggt gaaaatcggg gactttggga tgtcccggga cgtgtacagc actgactact
2221acagggtcgg tggccacaca atgctgccca ttcgctggat gccTCCAGAG AGCATCATGT
2281ACAGGAAATT CACGACGGAA AGCGACGTCT GGAGCCTGGG GGTCGTGTTG TGGGAGATTT
2341TCACCTATGG CAAACAGCCC TGGTACCAGC TGTCAAACAA TGAGGTGATA GAGTGTATCA
2401CTCAGGGCCG AGTCCTGCAG CGACCCCGCA CGTGCCCCCA GGAGGTGTAT GAGCTGATGC
2461TGGGGTGCTG GCAGCGAGAG CCCCACATGA GGAAGAACAT CAAGGGCATC CATACCCTCC
2521TTCAGAACTT GGCCAAGGCA TCTCCGGTCT ACCTGGACAT TCTAGGCAAG GGTGGGCGCG
2581CCGACCCAGC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
2641TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
2701GGCTTTATAT ATCTTGTGGA AAGGACGACT CACTGTCGAG CAACCATACT GAACGCGTTA
2761AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)